ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102625430	hypothetical protein
ath-u.5	RAD52-2	cobalt ion-binding protein
bra-r.6	103874910	DNA repair RAD52-like protein 2, chloroplastic
bra-r.6	103837233	DNA repair RAD52-like protein 2, chloroplastic
ghi-r.1	107888517	DNA repair RAD52-like protein 2, chloroplastic
ghi-r.1	107901978	DNA repair RAD52-like protein 2, chloroplastic
ghi-r.1	121203075	DNA repair RAD52-like protein 2, chloroplastic
bna-r.1	125596275	DNA repair RAD52-like protein 2, chloroplastic
bna-r.1	125590015	DNA repair RAD52-like protein 2, chloroplastic
bna-r.1	125590014	DNA repair RAD52-like protein 2, chloroplastic
gma-u.5	100306634	uncharacterized LOC100306634
vvi-u.5	100260946	DNA repair RAD52-like protein 2, chloroplastic
ppo-u.5	7497566	DNA repair RAD52-like protein 2, chloroplastic
ppo-u.5	7477769	DNA repair RAD52-like protein 2, chloroplastic
mtr-u.5	25495088	DNA repair RAD52-like protein 2, chloroplastic
sly-u.5	101259907	DNA repair RAD52-like protein 2, chloroplastic
sot-r.1	102587460	uncharacterized LOC102587460
nta-r.1	107808210	DNA repair RAD52-like protein 2, chloroplastic
nta-r.1	107832824	DNA repair RAD52-like protein 2, chloroplastic
osa-u.5	4334803	DNA repair RAD52-like protein 2, chloroplastic
osa-u.5	4347552	DNA repair RAD52-like protein 2, chloroplastic
zma-u.5	100281219	uncharacterized LOC100281219
zma-u.5	100285521	snRK1-interacting protein 1
tae-r.2	123123862	DNA repair RAD52-like protein 2, chloroplastic
tae-r.2	123122147	DNA repair RAD52-like protein 2, chloroplastic
tae-r.2	123114362	DNA repair RAD52-like protein 2, chloroplastic
hvu-r.1	123395151	DNA repair RAD52-like protein 2, chloroplastic
sbi-r.1	8061404	DNA repair RAD52-like protein 2, chloroplastic
sbi-r.1	8058991	DNA repair RAD52-like protein 2, chloroplastic
bdi-r.1	100825351	DNA repair RAD52-like protein 2, chloroplastic
bdi-r.1	100828030	DNA repair RAD52-like protein 2, chloroplastic

Top 50 coexpressed genes to 102625430 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102625430 (cit-r.1 coexpression data)

CoexMap"102625430"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination

(65 genes)

IEA

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(1476 genes)

IEA

Protein

XP_006494398.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_006494398.2)

Subcellular
localization
TargetP

chlo 3

(predict for XP_006494398.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102625430	ath-u.5 for RAD52-2	bra-r.6 for 103874910	bra-r.6 for 103837233	ghi-r.1 for 107888517	ghi-r.1 for 107901978	ghi-r.1 for 121203075	bna-r.1 for 125596275	bna-r.1 for 125590015	bna-r.1 for 125590014	gma-u.5 for 100306634	vvi-u.5 for 100260946	ppo-u.5 for 7497566	ppo-u.5 for 7477769	mtr-u.5 for 25495088	sly-u.5 for 101259907	sot-r.1 for 102587460	nta-r.1 for 107808210	nta-r.1 for 107832824	osa-u.5 for 4334803	osa-u.5 for 4347552	zma-u.5 for 100281219	zma-u.5 for 100285521	tae-r.2 for 123123862	tae-r.2 for 123122147	tae-r.2 for 123114362	hvu-r.1 for 123395151	sbi-r.1 for 8061404	sbi-r.1 for 8058991	bdi-r.1 for 100825351	bdi-r.1 for 100828030

Ortholog

Ortholog ID: 4136

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

RAD52-2

Function^*

hypothetical protein

cobalt ion-binding protein

DNA repair RAD52-like protein 2, chloroplastic

uncharacterized LOC100306634

DNA repair RAD52-like protein 2, chloroplastic

uncharacterized LOC102587460

DNA repair RAD52-like protein 2, chloroplastic

uncharacterized LOC100281219

snRK1-interacting protein 1

DNA repair RAD52-like protein 2, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01230	Biosynthesis of amino acids	9
ath00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
ath01200	Carbon metabolism	3
ath00010	Glycolysis / Gluconeogenesis	2
ath00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	8
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
bra00940	Phenylpropanoid biosynthesis	5
bra01200	Carbon metabolism	4
bra00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	13
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	11
bra00350	Tyrosine metabolism	3
bra00999	Biosynthesis of various plant secondary metabolites	3
bra00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
ghi01230	Biosynthesis of amino acids	7
ghi00350	Tyrosine metabolism	5
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi00360	Phenylalanine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
ghi01230	Biosynthesis of amino acids	7
ghi00350	Tyrosine metabolism	4
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
ghi00360	Phenylalanine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	6
ghi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	7
bna00280	Valine, leucine and isoleucine degradation	4
bna00410	beta-Alanine metabolism	4
bna00640	Propanoate metabolism	4
bna00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
bna01230	Biosynthesis of amino acids	7
bna00010	Glycolysis / Gluconeogenesis	2
bna00071	Fatty acid degradation	2
bna00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	7
bna01230	Biosynthesis of amino acids	7
bna00010	Glycolysis / Gluconeogenesis	2
bna00071	Fatty acid degradation	2
bna00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
gma01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01230	Biosynthesis of amino acids	3
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	3
ppo00940	Phenylpropanoid biosynthesis	3
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	6
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
ppo01230	Biosynthesis of amino acids	3
ppo00360	Phenylalanine metabolism	2
ppo00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	3
mtr00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
mtr01230	Biosynthesis of amino acids	3
mtr00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00510	N-Glycan biosynthesis	2
sly03060	Protein export	2
sly01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00400	Phenylalanine, tyrosine and tryptophan biosynthesis	9
sot01230	Biosynthesis of amino acids	9
sot04141	Protein processing in endoplasmic reticulum	5
sot04145	Phagosome	3
sot00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	9
osa00400	Phenylalanine, tyrosine and tryptophan biosynthesis	8
osa01200	Carbon metabolism	2
osa00940	Phenylpropanoid biosynthesis	2
osa00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	8
zma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	6
zma01200	Carbon metabolism	5
zma00010	Glycolysis / Gluconeogenesis	2
zma00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00900	Terpenoid backbone biosynthesis	6
zma00541	Biosynthesis of various nucleotide sugars	2
zma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00030	Pentose phosphate pathway	4
tae01200	Carbon metabolism	4
tae01230	Biosynthesis of amino acids	4
tae00710	Carbon fixation by Calvin cycle	3
tae00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	3
hvu00260	Glycine, serine and threonine metabolism	2
hvu00280	Valine, leucine and isoleucine degradation	2
hvu00310	Lysine degradation	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	3
bdi00230	Purine metabolism	2
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00620	Pyruvate metabolism	2
bdi00100	Steroid biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

102625430

834838

103874910

103837233

107901978

121203075

107941127

125596275

106363988

106397823

100306634

100260946

7497566

7477769

25495088

101259907

102587460

107808210

107832824

4334803

4347552

100281219

100285521

123123862

123114362

123101460

123395151

8061404

8058991

100825351

100828030

The preparation time of this page was 0.1 [sec].


Species	cit	ath	bra	ghi	bna	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	1	2	3	3	1	1	2	1	1	1	2	2	2	3	1	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102625430 (cit-r.1 coexpression data)

Top 50 enrichment test to 102625430 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**