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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102625466   protein gamma response 1 
 ath-u.5   GR1   protein gamma response 1 
 bra-r.6   103863489   protein gamma response 1 
 ghi-r.1   107916929   protein gamma response 1 
 ghi-r.1   107892000   protein gamma response 1 
 bna-r.1   106445669   protein gamma response 1-like 
 bna-r.1   106392342   protein gamma response 1 
 gma-u.5   100797086   protein gamma response 1 
 vvi-u.5   100855359   protein gamma response 1 
 ppo-u.5   7480093   protein gamma response 1 
 ppo-u.5   7475054   protein gamma response 1 
 mtr-u.5   11445150   protein gamma response 1 
 sly-u.5   101261556   protein gamma response 1 
 nta-r.1   107803524   protein gamma response 1 
 nta-r.1   107791449   protein gamma response 1-like 
 zma-u.5   100278695   uncharacterized LOC100278695 
 tae-r.2   123060500   protein gamma response 1 
 tae-r.2   123077569   protein gamma response 1 
 tae-r.2   123069050   protein gamma response 1 
 hvu-r.1   123443065   uncharacterized LOC123443065 
 hvu-r.1   123443014   protein gamma response 1 
 sbi-r.1   8067645   protein gamma response 1 
 bdi-r.1   100829576   protein gamma response 1 
 cre-r.1   CHLRE_04g227750v5   uncharacterized protein 

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Top 50 coexpressed genes to 102625466 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102625466 (cit-r.1 coexpression data)

CoexMap"102625466"


citLOC102625466 | Entrez gene ID : 102625466    
Species cit ath bra ghi bna gma vvi ppo mtr sly nta zma tae hvu sbi bdi cre sot osa
Paralog 1 1 1 2 2 1 1 2 1 1 2 1 3 2 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010792 [list] [network] DNA double-strand break processing involved in repair via single-strand annealing  (1 genes)  IEA  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (65 genes)  IEA  
GO CC
GO:0035861 [list] [network] site of double-strand break  (13 genes)  IEA  
GO MF
GO:0000403 [list] [network] Y-form DNA binding  (1 genes)  IEA  
GO:0000406 [list] [network] double-strand/single-strand DNA junction binding  (1 genes)  IEA  
GO:0070336 [list] [network] flap-structured DNA binding  (2 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (33 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (53 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (373 genes)  IEA  
Protein XP_006482904.1 [sequence] [blastp]
XP_006482905.1 [sequence] [blastp]
XP_024956719.1 [sequence] [blastp]
XP_024956720.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_006482904.1)
nucl 9,  cyto 1,  cysk 1  (predict for XP_006482905.1)
nucl 9  (predict for XP_024956719.1)
nucl 9  (predict for XP_024956720.1)
Subcellular
localization
TargetP
other 8  (predict for XP_006482904.1)
other 8  (predict for XP_006482905.1)
other 8  (predict for XP_024956719.1)
other 8  (predict for XP_024956720.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102625466
ath-u.5
for
GR1
bra-r.6
for
103863489
ghi-r.1
for
107916929
ghi-r.1
for
107892000
bna-r.1
for
106445669
bna-r.1
for
106392342
gma-u.5
for
100797086
vvi-u.5
for
100855359
ppo-u.5
for
7480093
ppo-u.5
for
7475054
mtr-u.5
for
11445150
sly-u.5
for
101261556
nta-r.1
for
107803524
nta-r.1
for
107791449
zma-u.5
for
100278695
tae-r.2
for
123060500
tae-r.2
for
123077569
tae-r.2
for
123069050
hvu-r.1
for
123443065
hvu-r.1
for
123443014
sbi-r.1
for
8067645
bdi-r.1
for
100829576
cre-r.1
for
CHLRE_04g227750v5


Ortholog ID: 9532
Species cit ath bra ghi ghi bna bna gma vvi ppo ppo mtr sly nta nta zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC102625466 GR1 LOC103863489 LOC107916929 LOC107892000 LOC106445669 LOC106392342 LOC100797086 LOC100855359 LOC7480093 LOC7475054 LOC11445150 LOC101261556 LOC107803524 LOC107791449 LOC100278695 LOC123060500 LOC123077569 LOC123069050 LOC123443065 LOC123443014 LOC8067645 LOC100829576 CHLRE_04g227750v5
Function* protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1-like protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1 protein gamma response 1-like uncharacterized LOC100278695 protein gamma response 1 protein gamma response 1 protein gamma response 1 uncharacterized LOC123443065 protein gamma response 1 protein gamma response 1 protein gamma response 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 6
ath03030 DNA replication 4
ath03460 Fanconi anemia pathway 4
ath03420 Nucleotide excision repair 3
ath00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna00240 Pyrimidine metabolism 4
bna00480 Glutathione metabolism 4
bna01232 Nucleotide metabolism 4
bna03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna00240 Pyrimidine metabolism 4
bna00480 Glutathione metabolism 4
bna01232 Nucleotide metabolism 4
bna03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma04141 Protein processing in endoplasmic reticulum 5
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 3
vvi04814 Motor proteins 2
vvi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03440 Homologous recombination 4
ppo03460 Fanconi anemia pathway 3
ppo03030 DNA replication 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 2
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 6
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 4
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 4
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00230 Purine metabolism 2
sbi00240 Pyrimidine metabolism 2
sbi00480 Glutathione metabolism 2
sbi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 4
bdi03410 Base excision repair 2
bdi03420 Nucleotide excision repair 2
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102625466 824375 103863489 107916929 107892000 106445669 106392342 100797086 100855359 7480093 7475054 11445150 101261556 107803524 107791449 100278695 123060500 123077569 123069050 123443065 123443014 8067645 100829576 66053292
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