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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102627355   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 cit-r.1   127900357   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like 
 ghi-r.1   107943234   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ghi-r.1   107932731   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ghi-r.1   107916920   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 gma-u.5   GPPS   geranyl-diphosphate synthase 
 vvi-u.5   100257234   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 ppo-u.5   7475657   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 mtr-u.5   11423374   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 
 sot-r.1   107060335   heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like 
 nta-r.1   107788443   heterodimeric geranylgeranyl pyrophosphate synthase small subunit 2, chloroplastic-like 
 nta-r.1   107779444   heterodimeric geranylgeranyl pyrophosphate synthase small subunit 2, chloroplastic-like 

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Top 50 coexpressed genes to 102627355 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102627355 (cit-r.1 coexpression data)

CoexMap"102627355"


citLOC102627355 | Entrez gene ID : 102627355      
Species cit ghi gma vvi ppo mtr sot nta tae zma sly bdi osa bna ath sbi hvu cre bra
Paralog 2 3 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit00900 [list] [network] Terpenoid backbone biosynthesis (56 genes)
GO BP
GO:0008299 [list] [network] isoprenoid biosynthetic process  (130 genes)  IEA  
GO CC
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (39 genes)  IEA  
Protein XP_006475060.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 4,  vacu 1  (predict for XP_006475060.1)
Subcellular
localization
TargetP
chlo 7,  mito 5  (predict for XP_006475060.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102627355
cit-r.1
for
127900357
ghi-r.1
for
107943234
ghi-r.1
for
107932731
ghi-r.1
for
107916920
gma-u.5
for
GPPS
vvi-u.5
for
100257234
ppo-u.5
for
7475657
mtr-u.5
for
11423374
sot-r.1
for
107060335
nta-r.1
for
107788443
nta-r.1
for
107779444


Ortholog ID: 14234
Species cit cit ghi ghi ghi gma vvi ppo mtr sot nta nta
Symbol LOC102627355 LOC127900357 LOC107943234 LOC107932731 LOC107916920 GPPS LOC100257234 LOC7475657 LOC11423374 LOC107060335 LOC107788443 LOC107779444
Function* heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic geranyl-diphosphate synthase heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit 2, chloroplastic-like heterodimeric geranylgeranyl pyrophosphate synthase small subunit 2, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00591 Linoleic acid metabolism 3
ghi00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00591 Linoleic acid metabolism 3
ghi00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 7
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 5
sot04016 MAPK signaling pathway - plant 4
sot02010 ABC transporters 2
sot00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00591 Linoleic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102627355 127900357 107943234 107932731 107916920 100170743 100257234 7475657 11423374 107060335 107788443 107779444
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