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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   GA3OX1   gibberellin 3-oxidase 1 
 bra-r.6   103872350   gibberellin 3-beta-dioxygenase 1 
 bra-r.6   103832494   gibberellin 3-beta-dioxygenase 2 
 ghi-r.1   107956573   gibberellin 3-beta-dioxygenase 1 
 ghi-r.1   107914840   gibberellin 3-beta-dioxygenase 1 
 ghi-r.1   107939172   gibberellin 3-beta-dioxygenase 1 
 bna-r.1   106436779   gibberellin 3-beta-dioxygenase 4-like 
 gma-u.5   GA3OX5   gibberellin 3-beta-dioxygenase 5 
 gma-u.5   GA3OX1   gibberellin 3-beta-dioxygenase 1 
 gma-u.5   GA3OX6   gibberellin 3-beta-dioxygenase 6 
 ppo-u.5   7475736   gibberellin 3-beta-dioxygenase 1 
 mtr-u.5   11432515   gibberellin 3-beta-dioxygenase 1 
 mtr-u.5   11432838   gibberellin 3-beta-dioxygenase 1 
 sly-u.5   GA3ox1   gibberellin 3-beta-dioxygenase 1 
 sot-r.1   102586814   gibberellin 3-beta-dioxygenase 1-like 
 nta-r.1   107821651   gibberellin 3-beta-dioxygenase 1 
 osa-u.5   4323864   gibberellin 3-beta-dioxygenase 2-like 
 zma-u.5   Dwarf1   Gibberellin 3-oxidase 
 tae-r.2   123042616   gibberellin 3-beta-dioxygenase 2-1-like 
 tae-r.2   123042617   gibberellin 3-beta-dioxygenase 2-2-like 
 hvu-r.1   123439542   gibberellin 3-beta-dioxygenase 2-2 
 sbi-r.1   8078789   gibberellin 3-beta-dioxygenase 2-2 
 bdi-r.1   100835718   gibberellin 3-beta-dioxygenase 2-2 

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Top 50 coexpressed genes to GA3OX1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GA3OX1 (ath-u.5 coexpression data)

CoexMap"102628175"


citLOC102628175 | Entrez gene ID : 102628175    
Species ath bra ghi bna gma ppo mtr sly sot nta osa zma tae hvu sbi bdi cre cit vvi
Paralog 1 2 3 1 3 1 2 1 1 1 1 1 2 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit00904 [list] [network] Diterpenoid biosynthesis (29 genes)
GO BP
GO:0009686 [list] [network] gibberellin biosynthetic process  (16 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (96 genes)  IEA  
GO CC
GO MF
GO:0016707 [list] [network] gibberellin 3-beta-dioxygenase activity  (4 genes)  IEA  
Protein XP_006465424.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  mito 3,  nucl 2,  cysk 1,  cyto_mito 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_006465424.2)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for XP_006465424.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
GA3OX1
bra-r.6
for
103872350
bra-r.6
for
103832494
ghi-r.1
for
107956573
ghi-r.1
for
107914840
ghi-r.1
for
107939172
bna-r.1
for
106436779
gma-u.5
for
GA3OX5
gma-u.5
for
GA3OX1
gma-u.5
for
GA3OX6
ppo-u.5
for
7475736
mtr-u.5
for
11432515
mtr-u.5
for
11432838
sly-u.5
for
GA3ox1
sot-r.1
for
102586814
nta-r.1
for
107821651
osa-u.5
for
4323864
zma-u.5
for
Dwarf1
tae-r.2
for
123042616
tae-r.2
for
123042617
hvu-r.1
for
123439542
sbi-r.1
for
8078789
bdi-r.1
for
100835718


Ortholog ID: 1181
Species ath bra ghi ghi bna gma ppo mtr mtr sly sly sot sot nta nta osa zma tae tae hvu sbi bdi
Symbol GA3OX2 LOC103872350 LOC107914840 LOC107937357 LOC106398553 GA3OX3 LOC7475736 LOC11432515 LOC11432838 GA3ox1 3OH-2 LOC102597914 LOC107059310 LOC107821651 LOC107824735 LOC4323864 Dwarf1 LOC123042616 LOC123186485 LOC123439542 LOC8078789 LOC100835718
Function* gibberellin 3-oxidase 2 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 4 gibberellin 3-beta-dioxygenase 3 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1 3b-hydroxylase gibberellin 3-beta-dioxygenase 1-like gibberellin 3-beta-dioxygenase 1-like gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1-like gibberellin 3-beta-dioxygenase 2-like Gibberellin 3-oxidase gibberellin 3-beta-dioxygenase 2-1-like gibberellin 3-beta-dioxygenase 2-3-like gibberellin 3-beta-dioxygenase 2-2 gibberellin 3-beta-dioxygenase 2-2 gibberellin 3-beta-dioxygenase 2-2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00941 Flavonoid biosynthesis 4
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00904 Diterpenoid biosynthesis 2
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00902 Monoterpenoid biosynthesis 2
mtr00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 2
tae00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00591 Linoleic acid metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844374 103872350 107914840 107937357 106398553 100776755 7475736 11432515 11432838 543503 543504 102597914 107059310 107821651 107824735 4323864 101202726 123042616 123186485 123439542 8078789 100835718
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