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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100807346   exonuclease DPD1, chloroplastic/mitochondrial 
 gma-u.5   100799702   exonuclease DPD1, chloroplastic/mitochondrial 
 mtr-u.5   11421359   exonuclease DPD1, chloroplastic/mitochondrial 
 ppo-u.5   18098619   exonuclease DPD1, chloroplastic/mitochondrial 
 ath-u.5   DPD1   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 vvi-u.5   100264957   exonuclease DPD1, chloroplastic/mitochondrial 
 ghi-r.1   107894015   exonuclease DPD1, chloroplastic/mitochondrial 
 ghi-r.1   107899064   exonuclease DPD1, chloroplastic/mitochondrial 
 bna-r.1   106348703   exonuclease DPD1, chloroplastic/mitochondrial 
 bna-r.1   106390215   exonuclease DPD1, chloroplastic/mitochondrial-like 
 cit-r.1   102613049   exonuclease DPD1, chloroplastic/mitochondrial 
 sly-u.5   101265679   exonuclease DPD1, chloroplastic/mitochondrial 
 sot-r.1   102594306   exonuclease DPD1, chloroplastic/mitochondrial 
 nta-r.1   107768806   exonuclease DPD1, chloroplastic/mitochondrial 
 nta-r.1   107760281   exonuclease DPD1, chloroplastic/mitochondrial 
 osa-u.5   4332575   exonuclease DPD1, chloroplastic/mitochondrial 
 osa-u.5   4337047   exonuclease DPD1, chloroplastic/mitochondrial 
 zma-u.5   100192533   uncharacterized LOC100192533 
 tae-r.2   123054630   exonuclease DPD1, chloroplastic/mitochondrial 
 tae-r.2   123190478   exonuclease DPD1, chloroplastic/mitochondrial 
 hvu-r.1   123427788   exonuclease DPD1, chloroplastic/mitochondrial-like 
 sbi-r.1   8074728   exonuclease DPD1, chloroplastic/mitochondrial 
 bdi-r.1   100829347   exonuclease DPD1, chloroplastic/mitochondrial 
 cre-r.1   CHLRE_05g240100v5   uncharacterized protein 

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Top 50 coexpressed genes to 100807346 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100807346 (gma-u.5 coexpression data)

CoexMap"102663053"


gmaLOC102663053 | Entrez gene ID : 102663053    
Species gma mtr ppo ath vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 2 1 1 1 1 2 2 1 1 1 2 2 1 2 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006308 [list] [network] DNA catabolic process  (14 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0008296 [list] [network] 3'-5'-DNA exonuclease activity  (22 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (6221 genes)  IEA  
Protein XP_006606550.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  cyto_E.R. 2,  E.R. 1,  mito 1,  extr 1,  cysk 1  (predict for XP_006606550.1)
Subcellular
localization
TargetP
other 8  (predict for XP_006606550.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100807346
gma-u.5
for
100799702
mtr-u.5
for
11421359
ppo-u.5
for
18098619
ath-u.5
for
DPD1
vvi-u.5
for
100264957
ghi-r.1
for
107894015
ghi-r.1
for
107899064
bna-r.1
for
106348703
bna-r.1
for
106390215
cit-r.1
for
102613049
sly-u.5
for
101265679
sot-r.1
for
102594306
nta-r.1
for
107768806
nta-r.1
for
107760281
osa-u.5
for
4332575
osa-u.5
for
4337047
zma-u.5
for
100192533
tae-r.2
for
123054630
tae-r.2
for
123190478
hvu-r.1
for
123427788
sbi-r.1
for
8074728
bdi-r.1
for
100829347
cre-r.1
for
CHLRE_05g240100v5


Ortholog ID: 7738
Species gma gma mtr ppo ath vvi ghi ghi bna bna cit sly sot nta nta osa osa zma tae tae hvu sbi bdi cre
Symbol LOC100807346 LOC100799702 LOC11421359 LOC18098619 DPD1 LOC100264957 LOC107894015 LOC107899064 LOC106348703 LOC106390215 LOC102613049 LOC101265679 LOC102594306 LOC107768806 LOC107760281 LOC4332575 LOC4337047 LOC100192533 LOC123054630 LOC123046775 LOC123427788 LOC8074728 LOC100829347 CHLRE_05g240100v5
Function* exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial Polynucleotidyl transferase, ribonuclease H-like superfamily protein exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial-like exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial uncharacterized LOC100192533 exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial-like exonuclease DPD1, chloroplastic/mitochondrial exonuclease DPD1, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 4
gma04142 Lysosome 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 6
gma01240 Biosynthesis of cofactors 3
gma04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 4
ath04146 Peroxisome 2
ath00071 Fatty acid degradation 2
ath01212 Fatty acid metabolism 2
ath04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04820 Cytoskeleton in muscle cells 2
nta04146 Peroxisome 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
tae00670 One carbon pool by folate 2
tae00785 Lipoic acid metabolism 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi01230 Biosynthesis of amino acids 4
bdi00300 Lysine biosynthesis 3
bdi03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100807346 100799702 11421359 18098619 832752 100264957 107894015 107899064 106348703 106390215 102613049 101265679 102594306 107768806 107760281 4332575 4337047 100192533 123054630 123046775 123427788 8074728 100829347 5723270
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