ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103627610	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
zma-r.6	103627610	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
zma-u.5	100501454	nine-cis-epoxycarotenoid dioxygenase6
sbi-r.1	110434687	zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic-like
osa-u.5	4330451	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
osa-u.5	4352125	9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like
tae-r.2	123128116	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
tae-r.2	123137906	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
tae-r.2	123145208	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
hvu-r.1	123401792	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like
bdi-r.1	100845393	9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic
ath-u.5	NCED4	nine-cis-epoxycarotenoid dioxygenase 4
gma-u.5	100777875	probable carotenoid cleavage dioxygenase 4, chloroplastic
sly-u.5	101250828	probable carotenoid cleavage dioxygenase 4, chloroplastic
sly-u.5	101250535	probable carotenoid cleavage dioxygenase 4, chloroplastic
bra-r.6	103857159	probable carotenoid cleavage dioxygenase 4, chloroplastic
bra-r.6	103834110	probable carotenoid cleavage dioxygenase 4, chloroplastic
vvi-u.5	100252859	probable carotenoid cleavage dioxygenase 4, chloroplastic
vvi-u.5	100251100	probable carotenoid cleavage dioxygenase 4, chloroplastic
ppo-u.5	112327632	probable carotenoid cleavage dioxygenase 4, chloroplastic
ppo-u.5	7494613	probable carotenoid cleavage dioxygenase 4, chloroplastic
mtr-u.5	11416550	probable carotenoid cleavage dioxygenase 4, chloroplastic
mtr-u.5	11413490	probable carotenoid cleavage dioxygenase 4, chloroplastic
mtr-u.5	11409428	probable carotenoid cleavage dioxygenase 4, chloroplastic
ghi-r.1	107947364	probable carotenoid cleavage dioxygenase 4, chloroplastic
ghi-r.1	107946820	probable carotenoid cleavage dioxygenase 4, chloroplastic
bna-r.1	125610300	probable carotenoid cleavage dioxygenase 4, chloroplastic
bna-r.1	106360920	probable carotenoid cleavage dioxygenase 4, chloroplastic
bna-r.1	106377068	probable carotenoid cleavage dioxygenase 4, chloroplastic
sot-r.1	102581808	probable carotenoid cleavage dioxygenase 4, chloroplastic
cit-r.1	102612995	probable carotenoid cleavage dioxygenase 4, chloroplastic
nta-r.1	107823578	probable carotenoid cleavage dioxygenase 4, chloroplastic
nta-r.1	107791323	probable carotenoid cleavage dioxygenase 4, chloroplastic
nta-r.1	107767418	putative carotenoid cleavage dioxygenase 4, chloroplastic

Top 50 coexpressed genes to 103627610 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103627610 (zma-u.5 coexpression data)

CoexMap"103627610"

[Cytoscape]

Annotation

functional annotation

KEGG

zma00906 [list] [network] Carotenoid biosynthesis (50 genes)

GO BP

GO:0016121 [list] [network] carotene catabolic process

(17 genes)

IEA

GO CC

GO:0009570 [list] [network] chloroplast stroma

(118 genes)

IEA

GO MF

GO:0010436 [list] [network] carotenoid dioxygenase activity

(17 genes)

IEA

Protein

XP_008646127.3 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for XP_008646127.3)

Subcellular
localization
TargetP

mito 8, other 6

(predict for XP_008646127.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103627610	zma-r.6 for 103627610	zma-u.5 for 100501454	sbi-r.1 for 110434687	osa-u.5 for 4330451	osa-u.5 for 4352125	tae-r.2 for 123128116	tae-r.2 for 123137906	tae-r.2 for 123145208	hvu-r.1 for 123401792	bdi-r.1 for 100845393	ath-u.5 for NCED4	gma-u.5 for 100777875	sly-u.5 for 101250828	sly-u.5 for 101250535	bra-r.6 for 103857159	bra-r.6 for 103834110	vvi-u.5 for 100252859	vvi-u.5 for 100251100	ppo-u.5 for 112327632	ppo-u.5 for 7494613	mtr-u.5 for 11416550	mtr-u.5 for 11413490	mtr-u.5 for 11409428	ghi-r.1 for 107947364	ghi-r.1 for 107946820	bna-r.1 for 125610300	bna-r.1 for 106360920	bna-r.1 for 106377068	sot-r.1 for 102581808	cit-r.1 for 102612995	nta-r.1 for 107823578	nta-r.1 for 107791323	nta-r.1 for 107767418

Ortholog

Ortholog ID: 6042

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

NCED4

Function^*

9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic

nine-cis-epoxycarotenoid dioxygenase6

zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic-like

9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like

9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like

9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic

9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like

9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic

nine-cis-epoxycarotenoid dioxygenase 4

probable carotenoid cleavage dioxygenase 4, chloroplastic

putative carotenoid cleavage dioxygenase 4, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00592	alpha-Linolenic acid metabolism	3
tae00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	4
tae00906	Carotenoid biosynthesis	3
tae00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00906	Carotenoid biosynthesis	3
tae00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	2
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00860	Porphyrin metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	7
ppo00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00630	Glyoxylate and dicarboxylate metabolism	3
ppo01200	Carbon metabolism	3
ppo00195	Photosynthesis	2
ppo00020	Citrate cycle (TCA cycle)	2
ppo00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00906	Carotenoid biosynthesis	3
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00860	Porphyrin metabolism	4
mtr00906	Carotenoid biosynthesis	3
mtr04082	Neuroactive ligand signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00906	Carotenoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00906	Carotenoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00906	Carotenoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00730	Thiamine metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	2
cit04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00906	Carotenoid biosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

103627610

100501454

110434687

4330451

4352125

123128116

123137906

123145208

123401792

100845393

827655

100777875

101250828

101250535

103857159

103834110

100252859

100251100

112327632

7494613

11416550

11413490

11409428

107947364

107946820

125610300

106360920

106377068

102581808

102612995

107823578

107791323

107767418

The preparation time of this page was 0.1 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	2	3	1	1	1	1	2	2	2	2	3	2	3	1	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103627610 (zma-u.5 coexpression data)

Top 50 enrichment test to 103627610 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**