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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   103633431   putative RNA helicase family protein 
 zma-r.6   103633431   putative RNA helicase family protein 
 sbi-r.1   8079212   ATP-dependent RNA helicase DEAH11, chloroplastic 
 osa-u.5   4343939   ATP-dependent RNA helicase DEAH11, chloroplastic 
 tae-r.2   123060403   ATP-dependent RNA helicase DEAH11, chloroplastic 
 tae-r.2   123068937   ATP-dependent RNA helicase DEAH11, chloroplastic 
 tae-r.2   123077468   ATP-dependent RNA helicase DEAH11, chloroplastic 
 hvu-r.1   123395777   ATP-dependent RNA helicase DEAH12, chloroplastic-like 
 hvu-r.1   123425257   ATP-dependent RNA helicase DEAH12, chloroplastic-like 
 bdi-r.1   100837627   ATP-dependent RNA helicase DEAH11, chloroplastic 
 ath-u.5   AT4G01020   helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein 
 ath-u.5   AT5G10370   helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein 
 gma-u.5   HELRP   ATP-dependent RNA helicase DEAH12, chloroplastic 
 gma-u.5   100806464   ATP-dependent RNA helicase DEAH12, chloroplastic 
 sly-u.5   101260893   ATP-dependent RNA helicase DEAH11, chloroplastic-like 
 sly-u.5   101247309   ATP-dependent RNA helicase DEAH12, chloroplastic-like 
 bra-r.6   103855862   ATP-dependent RNA helicase DEAH12, chloroplastic 
 bra-r.6   103846814   ATP-dependent RNA helicase DEAH12, chloroplastic 
 vvi-u.5   100254070   ATP-dependent RNA helicase DEAH11, chloroplastic 
 ppo-u.5   7455185   ATP-dependent RNA helicase DEAH12, chloroplastic 
 ppo-u.5   7461259   ATP-dependent RNA helicase DEAH11, chloroplastic 
 mtr-u.5   25482846   ATP-dependent RNA helicase DEAH12, chloroplastic 
 mtr-u.5   11423024   ATP-dependent RNA helicase DEAH11, chloroplastic 
 mtr-u.5   11415010   ATP-dependent RNA helicase DEAH11, chloroplastic 
 ghi-r.1   107914369   ATP-dependent RNA helicase DEAH11, chloroplastic 
 ghi-r.1   107950424   ATP-dependent RNA helicase DEAH11, chloroplastic 
 ghi-r.1   121208253   ATP-dependent RNA helicase DEAH11, chloroplastic 
 bna-r.1   106372475   ATP-dependent RNA helicase DEAH12, chloroplastic-like 
 bna-r.1   106384901   ATP-dependent RNA helicase DEAH12, chloroplastic-like 
 bna-r.1   106404492   ATP-dependent RNA helicase DEAH12, chloroplastic 
 sot-r.1   102589433   putative uncharacterized protein At4g01020, chloroplastic 
 sot-r.1   102585171   putative uncharacterized protein At4g01020, chloroplastic 
 cit-r.1   102610569   ATP-dependent RNA helicase DEAH11, chloroplastic-like 
 nta-r.1   107799341   ATP-dependent RNA helicase DEAH11, chloroplastic-like 
 nta-r.1   107821472   ATP-dependent RNA helicase DEAH11, chloroplastic 
 nta-r.1   107796371   ATP-dependent RNA helicase DEAH11, chloroplastic-like 

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Top 50 coexpressed genes to 103633431 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103633431 (zma-u.5 coexpression data)

CoexMap"103633431"


zmaLOC103633431 | Entrez gene ID : 103633431    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 1 1 3 2 1 2 2 2 2 1 2 3 3 3 2 1 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03040 [list] [network] Spliceosome (506 genes)
GO BP
GO CC
GO:0005622 [list] [network] intracellular anatomical structure  (9110 genes)  IEA  
GO MF
GO:0004386 [list] [network] helicase activity  (173 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (807 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2473 genes)  IEA  
Protein XP_020396611.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 3,  mito 2  (predict for XP_020396611.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for XP_020396611.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
103633431
zma-r.6
for
103633431
sbi-r.1
for
8079212
osa-u.5
for
4343939
tae-r.2
for
123060403
tae-r.2
for
123068937
tae-r.2
for
123077468
hvu-r.1
for
123395777
hvu-r.1
for
123425257
bdi-r.1
for
100837627
ath-u.5
for
AT4G01020
ath-u.5
for
AT5G10370
gma-u.5
for
HELRP
gma-u.5
for
100806464
sly-u.5
for
101260893
sly-u.5
for
101247309
bra-r.6
for
103855862
bra-r.6
for
103846814
vvi-u.5
for
100254070
ppo-u.5
for
7455185
ppo-u.5
for
7461259
mtr-u.5
for
25482846
mtr-u.5
for
11423024
mtr-u.5
for
11415010
ghi-r.1
for
107914369
ghi-r.1
for
107950424
ghi-r.1
for
121208253
bna-r.1
for
106372475
bna-r.1
for
106384901
bna-r.1
for
106404492
sot-r.1
for
102589433
sot-r.1
for
102585171
cit-r.1
for
102610569
nta-r.1
for
107799341
nta-r.1
for
107821472
nta-r.1
for
107796371


Ortholog ID: 5136
Species zma sbi osa tae tae tae hvu hvu bdi ath ath gma gma sly sly bra bra vvi ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot cit nta nta nta
Symbol LOC103633431 LOC8079212 LOC4343939 LOC123068937 LOC123119643 LOC123052047 LOC123395777 LOC123425257 LOC100837627 AT4G01020 AT5G10370 HELRP LOC100806464 LOC101260893 LOC101247309 LOC103855862 LOC103846814 LOC100254070 LOC7455185 LOC7461259 LOC25482846 LOC11423024 LOC11415010 LOC107914369 LOC107950424 LOC121208253 LOC106372475 LOC106384901 LOC106404492 LOC102589433 LOC102585171 LOC102610569 LOC107799341 LOC107821472 LOC107796371
Function* putative RNA helicase family protein ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH11, chloroplastic helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic-like ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH12, chloroplastic-like ATP-dependent RNA helicase DEAH12, chloroplastic putative uncharacterized protein At4g01020, chloroplastic putative uncharacterized protein At4g01020, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic-like ATP-dependent RNA helicase DEAH11, chloroplastic-like ATP-dependent RNA helicase DEAH11, chloroplastic ATP-dependent RNA helicase DEAH11, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03013 Nucleocytoplasmic transport 2
sbi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae03040 Spliceosome 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
mtr03040 Spliceosome 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi04142 Lysosome 3
ghi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit00052 Galactose metabolism 2
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
nta04136 Autophagy - other 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta04820 Cytoskeleton in muscle cells 2
nta04136 Autophagy - other 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00760 Nicotinate and nicotinamide metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103633431 8079212 4343939 123068937 123119643 123052047 123395777 123425257 100837627 826439 830901 100810008 100806464 101260893 101247309 103855862 103846814 100254070 7455185 7461259 25482846 11423024 11415010 107914369 107950424 121208253 106372475 106384901 106404492 102589433 102585171 102610569 107799341 107821472 107796371
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