ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100281552	uncharacterized LOC100281552
zma-u.5	100501308	WD repeat-containing protein 44
zma-u.5	100275689	uncharacterized LOC100275689
sbi-r.1	8078001	WD repeat-containing protein 44
sbi-r.1	8061027	WD repeat-containing protein 44
sbi-r.1	8057600	WD repeat-containing protein 44
osa-u.5	4330099	uncharacterized LOC4330099
osa-u.5	9269146	uncharacterized LOC9269146
tae-r.2	123046047	WD repeat-containing protein 44
tae-r.2	123093849	kinesin-like protein KIF21B
hvu-r.1	123449932	uncharacterized LOC123449932
hvu-r.1	123428340	WD repeat-containing protein 44-like
bdi-r.1	100825540	WD repeat-containing protein 44
bdi-r.1	100827380	WD repeat-containing protein 44
bdi-r.1	100828955	WD repeat-containing protein 44
ath-u.5	AT2G37670	Transducin/WD40 repeat-like superfamily protein
ath-u.5	AT1G64610	Transducin/WD40 repeat-like superfamily protein
ath-u.5	AT1G48870	Transducin/WD40 repeat-like superfamily protein
gma-u.5	100782200	WD repeat-containing protein 44
gma-u.5	100780979	periodic tryptophan protein 2 homolog
sly-u.5	101263074	uncharacterized WD repeat-containing protein C18H10.05
sly-u.5	101256031	uncharacterized LOC101256031
sly-u.5	101262736	uncharacterized WD repeat-containing protein C3H5.08c
bra-r.6	103838192	WD repeat-containing protein 44
bra-r.6	103850247	uncharacterized LOC103850247
bra-r.6	103874301	uncharacterized WD repeat-containing protein C3H5.08c
vvi-u.5	100247276	WD repeat-containing protein YMR102C
vvi-u.5	100241604	WD repeat-containing protein YMR102C
vvi-u.5	100249640	uncharacterized LOC100249640
ppo-u.5	7485061	uncharacterized LOC7485061
ppo-u.5	7462346	uncharacterized LOC7462346
mtr-u.5	25502243	uncharacterized WD repeat-containing protein alr3466
mtr-u.5	25491138	WD repeat-containing protein 44
mtr-u.5	25487371	WD repeat-containing protein 44
ghi-r.1	107929490	uncharacterized WD repeat-containing protein C18H10.05
ghi-r.1	107924375	WD repeat-containing protein 44
ghi-r.1	107924161	WD repeat-containing protein 44
bna-r.1	125576587	uncharacterized LOC125576587
bna-r.1	111200919	WD repeat-containing protein 44-like
sot-r.1	102579447	POC1 centriolar protein homolog A-like
sot-r.1	102595963	WD repeat-containing protein 44
cit-r.1	102612372	uncharacterized LOC102612372
cit-r.1	102618704	WD repeat-containing protein YMR102C-like
cit-r.1	102606796	uncharacterized LOC102606796
nta-r.1	107810992	uncharacterized LOC107810992
nta-r.1	107767434	uncharacterized LOC107767434
nta-r.1	107769711	uncharacterized LOC107769711
cre-r.1	CHLRE_06g276100v5	uncharacterized protein

Top 50 coexpressed genes to 100281552 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100281552 (zma-u.5 coexpression data)

CoexMap"103633772"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(4389 genes)

IEA

Protein

XP_008653679.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 4, chlo 3, cyto 3

(predict for XP_008653679.1)

Subcellular
localization
TargetP

mito 4

(predict for XP_008653679.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100281552	zma-u.5 for 100501308	zma-u.5 for 100275689	sbi-r.1 for 8078001	sbi-r.1 for 8061027	sbi-r.1 for 8057600	osa-u.5 for 4330099	osa-u.5 for 9269146	tae-r.2 for 123046047	tae-r.2 for 123093849	hvu-r.1 for 123449932	hvu-r.1 for 123428340	bdi-r.1 for 100825540	bdi-r.1 for 100827380	bdi-r.1 for 100828955	ath-u.5 for AT2G37670	ath-u.5 for AT1G64610	ath-u.5 for AT1G48870	gma-u.5 for 100782200	gma-u.5 for 100780979	sly-u.5 for 101263074	sly-u.5 for 101256031	sly-u.5 for 101262736	bra-r.6 for 103838192	bra-r.6 for 103850247	bra-r.6 for 103874301	vvi-u.5 for 100247276	vvi-u.5 for 100241604	vvi-u.5 for 100249640	ppo-u.5 for 7485061	ppo-u.5 for 7462346	mtr-u.5 for 25502243	mtr-u.5 for 25491138	mtr-u.5 for 25487371	ghi-r.1 for 107929490	ghi-r.1 for 107924375	ghi-r.1 for 107924161	bna-r.1 for 125576587	bna-r.1 for 111200919	sot-r.1 for 102579447	sot-r.1 for 102595963	cit-r.1 for 102612372	cit-r.1 for 102618704	cit-r.1 for 102606796	nta-r.1 for 107810992	nta-r.1 for 107767434	nta-r.1 for 107769711	cre-r.1 for CHLRE_06g276100v5

Ortholog

Ortholog ID: 182

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

WD repeat-containing protein 44

Transducin/WD40 repeat-like superfamily protein

WD repeat-containing protein 44

2-deoxy-glucose resistant protein 2

uncharacterized LOC4336699

uncharacterized LOC4337413

WD repeat-containing protein 44

WD repeat-containing protein YMR102C

WD repeat-containing protein 44

uncharacterized LOC123449932

WD repeat-containing protein 44-like

uncharacterized WD repeat-containing protein sll0163-like

WD repeat-containing protein 44

uncharacterized LOC100842788

WD repeat-containing protein 44

Transducin/WD40 repeat-like superfamily protein

WD repeat-containing protein 44

WD repeat-containing protein YMR102C

WD repeat-containing protein 44

uncharacterized LOC101256031

uncharacterized LOC101249662

uncharacterized LOC101245001

uncharacterized LOC103850247

WD repeat-containing protein 44

WD repeat-containing protein YMR102C

uncharacterized LOC100249640

WD repeat-containing protein YMR102C

uncharacterized LOC7497506

uncharacterized LOC7497266

vegetative incompatibility protein HET-E-1

uncharacterized WD repeat-containing protein alr3466

WD repeat-containing protein 44

2-deoxy-glucose resistant protein 2

WD repeat-containing protein 44

U4/U6 small nuclear ribonucleoprotein Prp4

WD repeat-containing protein YMR102C-like

uncharacterized LOC102614368

uncharacterized LOC102609724

WD repeat-containing protein YMR102C

uncharacterized LOC107766553

uncharacterized LOC107823380

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00061	Fatty acid biosynthesis	4
zma01212	Fatty acid metabolism	4
zma00900	Terpenoid backbone biosynthesis	3
zma00620	Pyruvate metabolism	2
zma00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	4
sbi04145	Phagosome	2
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00561	Glycerolipid metabolism	3
osa00566	Sulfoquinovose metabolism	3
osa00564	Glycerophospholipid metabolism	2
osa00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3
tae03015	mRNA surveillance pathway	2
tae04382	Cornified envelope formation	2
tae04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00062	Fatty acid elongation	6
tae04626	Plant-pathogen interaction	6
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	4
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	4
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	4
bra04016	MAPK signaling pathway - plant	4
bra02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	5
bna04626	Plant-pathogen interaction	5
bna00860	Porphyrin metabolism	2
bna01240	Biosynthesis of cofactors	2
bna04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04130	SNARE interactions in vesicular transport	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00920	Sulfur metabolism	2
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	4
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00280	Valine, leucine and isoleucine degradation	2

Expression

Expression pattern

Entrez Gene ID^*

103641868

103641627

8057600

8073010

4336699

4337413

123191051

123190040

123127830

123449932

123399755

123426697

100828955

100842788

100825146

842769

831780

820786

100817209

100801576

100807177

101256031

101249662

101245001

103850247

103844882

103865619

100241604

100249640

100245187

7497506

7497266

7467055

25502243

25487371

11435030

107920400

107904514

121215517

106387484

106366726

102595963

102583402

102585613

102618704

102614368

102609724

107770909

107766553

107823380

5721740

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Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	3	2	2	2	3	3	2	3	3	3	2	3	3	2	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100281552 (zma-u.5 coexpression data)

Top 50 enrichment test to 100281552 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**