ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	103638012	RNA polymerase II transcription factor B subunit 3
zma-r.6	103638012	RNA polymerase II transcription factor B subunit 3
zma-m.5	103638012	RNA polymerase II transcription factor B subunit 3
sbi-r.1	8072575	uncharacterized LOC8072575
osa-u.5	4340268	uncharacterized LOC4340268
osa-u.5	4350497	uncharacterized LOC4350497
tae-r.2	123160923	uncharacterized LOC123160923
tae-r.2	123152550	uncharacterized LOC123152550
tae-r.2	123167001	uncharacterized LOC123167001
hvu-r.1	123410832	uncharacterized LOC123410832
bdi-r.1	100823414	uncharacterized LOC100823414
bdi-r.1	100842017	uncharacterized LOC100842017
ath-u.5	AT4G30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein
gma-u.5	100305654	uncharacterized LOC100305654
sly-u.5	101265536	CDK-activating kinase assembly factor-related
bra-r.6	103862006	uncharacterized LOC103862006
bra-r.6	103834652	uncharacterized LOC103834652
vvi-u.5	100246771	uncharacterized LOC100246771
ppo-u.5	7489425	uncharacterized LOC7489425
ppo-u.5	7485263	uncharacterized LOC7485263
mtr-u.5	11434892	CDK-activating kinase assembly factor MAT1
ghi-r.1	107945388	uncharacterized LOC107945388
ghi-r.1	107934206	CDK-activating kinase assembly factor MAT1
bna-r.1	BNAA08G12870D	uncharacterized BNAA08G12870D
sot-r.1	102589938	uncharacterized LOC102589938
cit-r.1	102617561	uncharacterized LOC102617561
nta-r.1	107807356	uncharacterized LOC107807356
nta-r.1	107817613	uncharacterized LOC107817613
cre-r.1	CHLRE_16g672753v5	uncharacterized protein

Annotation

functional annotation

KEGG

zma03022 [list] [network] Basal transcription factors (55 genes)

zma03420 [list] [network] Nucleotide excision repair (94 genes)

GO BP

GO:0006281 [list] [network] DNA repair	(335 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(427 genes)	IEA

GO CC

GO:0005675 [list] [network] transcription factor TFIIH holo complex

(9 genes)

IEA

GO MF

Protein

XP_008659242.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, mito 4, nucl 1, cysk_nucl 1

(predict for XP_008659242.1)

Subcellular
localization
TargetP

mito 6, other 5

(predict for XP_008659242.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103638012	zma-r.6 for 103638012	zma-m.5 for 103638012	sbi-r.1 for 8072575	osa-u.5 for 4340268	osa-u.5 for 4350497	tae-r.2 for 123160923	tae-r.2 for 123152550	tae-r.2 for 123167001	hvu-r.1 for 123410832	bdi-r.1 for 100823414	bdi-r.1 for 100842017	ath-u.5 for AT4G30820	gma-u.5 for 100305654	sly-u.5 for 101265536	bra-r.6 for 103862006	bra-r.6 for 103834652	vvi-u.5 for 100246771	ppo-u.5 for 7489425	ppo-u.5 for 7485263	mtr-u.5 for 11434892	ghi-r.1 for 107945388	ghi-r.1 for 107934206	bna-r.1 for BNAA08G12870D	sot-r.1 for 102589938	cit-r.1 for 102617561	nta-r.1 for 107807356	nta-r.1 for 107817613	cre-r.1 for CHLRE_16g672753v5

Ortholog

Ortholog ID: 7299

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

RNA polymerase II transcription factor B subunit 3

uncharacterized LOC8072575

uncharacterized LOC4340268

uncharacterized LOC4350497

uncharacterized LOC123160923

uncharacterized LOC123152550

uncharacterized LOC123167001

uncharacterized LOC123410832

uncharacterized LOC100823414

uncharacterized LOC100842017

cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein

uncharacterized LOC100305654

CDK-activating kinase assembly factor-related

uncharacterized LOC103862006

uncharacterized LOC103834652

uncharacterized LOC100246771

uncharacterized LOC7489425

uncharacterized LOC7485263

CDK-activating kinase assembly factor MAT1

uncharacterized LOC107945388

CDK-activating kinase assembly factor MAT1

uncharacterized BNAA08G12870D

uncharacterized LOC102589938

uncharacterized LOC102617561

uncharacterized LOC107807356

uncharacterized LOC107817613

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03420	Nucleotide excision repair	3
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03420	Nucleotide excision repair	3
osa03020	RNA polymerase	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae04120	Ubiquitin mediated proteolysis	4
tae03083	Polycomb repressive complex	3
tae03022	Basal transcription factors	3
tae03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03083	Polycomb repressive complex	3
tae04120	Ubiquitin mediated proteolysis	3
tae03022	Basal transcription factors	3
tae03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	4
tae04141	Protein processing in endoplasmic reticulum	4
tae03083	Polycomb repressive complex	3
tae03022	Basal transcription factors	3
tae03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi00514	Other types of O-glycan biosynthesis	2
bdi03022	Basal transcription factors	2
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi00510	N-Glycan biosynthesis	2
bdi00513	Various types of N-glycan biosynthesis	2
bdi04141	Protein processing in endoplasmic reticulum	2
bdi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	3
gma03040	Spliceosome	2
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	4
sly03015	mRNA surveillance pathway	3
sly03013	Nucleocytoplasmic transport	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	7
mtr03040	Spliceosome	5
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03420	Nucleotide excision repair	2
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04136	Autophagy - other	2
ghi04382	Cornified envelope formation	2
ghi03022	Basal transcription factors	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04136	Autophagy - other	2
ghi04382	Cornified envelope formation	2
ghi03022	Basal transcription factors	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	7
sot03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	8
nta03040	Spliceosome	3
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	3
nta03040	Spliceosome	3
nta03022	Basal transcription factors	2
nta03420	Nucleotide excision repair	2
nta03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

103638012

8072575

4340268

4350497

123160923

123152550

123167001

123410832

100823414

100842017

829205

100305654

101265536

103862006

103834652

100246771

7489425

7485263

11434892

107945388

107934206

106424110

102589938

102617561

107807356

107817613

5724826

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103638012 (zma-u.5 coexpression data)

Top 50 enrichment test to 103638012 (zma-u.5 coexpression data)


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	2	3	1	2	1	1	1	2	1	2	1	2	1	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103638012 (zma-u.5 coexpression data)

Top 50 enrichment test to 103638012 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**