ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	103638790	RNA-binding protein 38
zma-r.6	103638790	RNA-binding protein 38
zma-u.5	100279322	uncharacterized LOC100279322
zma-u.5	100501435	uncharacterized LOC100501435
zma-u.5	100284337	uncharacterized LOC100284337
sbi-r.1	8073831	RNA-binding protein 24
sbi-r.1	8083468	RNA-binding protein 24-A
osa-u.5	4341556	uncharacterized LOC4341556
osa-u.5	4330510	RNA-binding protein 24
tae-r.2	123164723	RNA-binding protein 38
tae-r.2	123148422	RNA-binding protein 24-A
tae-r.2	123128176	RNA-binding protein 24
hvu-r.1	123401010	RNA-binding protein 24-like
hvu-r.1	123410805	RNA-binding protein 24-A-like
bdi-r.1	100833583	RNA-binding protein 24
bdi-r.1	100823039	RNA-binding protein 24-A
ath-u.5	AT1G20880	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT1G76460	RNA-binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100782606	RNA-binding protein 38
gma-u.5	100779244	RNA-binding protein 38
sly-u.5	101268392	uncharacterized LOC101268392
bra-r.6	103872876	RNA-binding protein 24
bra-r.6	103829408	RNA-binding protein 24
bra-r.6	103835770	RNA-binding protein 24
vvi-u.5	100258188	uncharacterized LOC100258188
ppo-u.5	7485663	uncharacterized LOC7485663
ppo-u.5	7471743	uncharacterized LOC7471743
mtr-u.5	11412629	RNA-binding protein 38
ghi-r.1	107917869	RNA-binding protein 24-B
ghi-r.1	107922223	RNA-binding protein 38
bna-r.1	106412204	RNA-binding protein 24-like
bna-r.1	106421379	RNA-binding protein 24
bna-r.1	106347291	RNA-binding protein 24
sot-r.1	102584346	RNA-binding protein 38
cit-r.1	102608795	uncharacterized LOC102608795
cit-r.1	102618742	uncharacterized LOC102618742
nta-r.1	107812947	uncharacterized LOC107812947

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1549 genes)

IEA

Protein

XP_008659825.1 [sequence] [blastp]
XP_008659826.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 2, cyto 2, cyto_nucl 2	(predict for XP_008659825.1)
chlo 4, nucl 2, cyto 2, cyto_nucl 2	(predict for XP_008659826.1)

Subcellular
localization
TargetP

other 7, mito 3	(predict for XP_008659825.1)
other 7, mito 3	(predict for XP_008659826.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103638790	zma-r.6 for 103638790	zma-u.5 for 100279322	zma-u.5 for 100501435	zma-u.5 for 100284337	sbi-r.1 for 8073831	sbi-r.1 for 8083468	osa-u.5 for 4341556	osa-u.5 for 4330510	tae-r.2 for 123164723	tae-r.2 for 123148422	tae-r.2 for 123128176	hvu-r.1 for 123401010	hvu-r.1 for 123410805	bdi-r.1 for 100833583	bdi-r.1 for 100823039	ath-u.5 for AT1G20880	ath-u.5 for AT1G76460	gma-u.5 for 100782606	gma-u.5 for 100779244	sly-u.5 for 101268392	bra-r.6 for 103872876	bra-r.6 for 103829408	bra-r.6 for 103835770	vvi-u.5 for 100258188	ppo-u.5 for 7485663	ppo-u.5 for 7471743	mtr-u.5 for 11412629	ghi-r.1 for 107917869	ghi-r.1 for 107922223	bna-r.1 for 106412204	bna-r.1 for 106421379	bna-r.1 for 106347291	sot-r.1 for 102584346	cit-r.1 for 102608795	cit-r.1 for 102618742	nta-r.1 for 107812947

Ortholog

Ortholog ID: 4001

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

RNA-binding protein 38

uncharacterized LOC100279322

uncharacterized LOC100284337

RNA-binding protein 24

RNA-binding protein 24-A

uncharacterized LOC4341556

RNA-binding protein 24

RNA-binding protein 38

RNA-binding protein 24

RNA-binding protein 24-B

RNA-binding protein 24-like

RNA-binding protein 24-A-like

RNA-binding protein 24

RNA-binding protein 24-A

RNA-binding (RRM/RBD/RNP motifs) family protein

RNA-binding protein 38

uncharacterized LOC101268392

RNA-binding protein 24

RNA-binding protein 24-B

uncharacterized LOC100258188

uncharacterized LOC7485663

uncharacterized LOC7471743

RNA-binding protein 38

RNA-binding protein 24-B

RNA-binding protein 38

RNA-binding protein 24

RNA-binding protein 24-B

RNA-binding protein 38

uncharacterized LOC102608795

uncharacterized LOC102618742

uncharacterized LOC107812947

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	2
tae00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00904	Diterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma00513	Various types of N-glycan biosynthesis	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2
bra04136	Autophagy - other	2
bra04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	5
ghi04136	Autophagy - other	2
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	3
cit04382	Cornified envelope formation	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00650	Butanoate metabolism	2
nta03015	mRNA surveillance pathway	2
nta04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

103638790

100279322

100284337

8073831

8083468

4341556

4330510

123164723

123128176

123145274

123401010

123410805

100833583

100823039

838681

843979

100782606

100779244

101268392

103872876

103835770

103832109

100258188

7485663

7471743

11412629

107917869

107922223

106421379

106347291

111207197

102584346

102608795

102618742

107812947

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103638790 (zma-u.5 coexpression data)

Top 50 enrichment test to 103638790 (zma-u.5 coexpression data)


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	2	2	3	2	2	2	2	1	3	1	2	1	2	3	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103638790 (zma-u.5 coexpression data)

Top 50 enrichment test to 103638790 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**