ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103639517	uncharacterized LOC103639517
zma-r.6	103639517	uncharacterized LOC103639517
zma-u.5	100277400	uncharacterized LOC100277400
zma-u.5	100191945	uncharacterized LOC100191945
zma-u.5	103626567	uncharacterized LOC103626567
sbi-r.1	8078481	uncharacterized LOC8078481
sbi-r.1	8072242	uncharacterized LOC8072242
sbi-r.1	8069921	uncharacterized LOC8069921
osa-u.5	4328191	uncharacterized LOC4328191
osa-u.5	4327642	uncharacterized LOC4327642
tae-r.2	123043882	uncharacterized LOC123043882
tae-r.2	123060253	uncharacterized LOC123060253
tae-r.2	123132033	uncharacterized LOC123132033
hvu-r.1	123442791	uncharacterized LOC123442791
hvu-r.1	123425438	uncharacterized LOC123425438
bdi-r.1	100846204	uncharacterized LOC100846204
bdi-r.1	100836266	uncharacterized LOC100836266
bdi-r.1	100829367	uncharacterized LOC100829367
ath-u.5	AT3G27770	plant/protein
ath-u.5	AT5G62960	UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein
gma-u.5	100804037	uncharacterized LOC100804037
gma-u.5	100815819	uncharacterized LOC100815819
gma-u.5	100820116	uncharacterized LOC100820116
sly-u.5	101250307	uncharacterized LOC101250307
sly-u.5	101249270	uncharacterized LOC101249270
sly-u.5	101253575	uncharacterized LOC101253575
bra-r.6	117127409	uncharacterized LOC117127409
bra-r.6	103873724	uncharacterized LOC103873724
bra-r.6	103871849	uncharacterized LOC103871849
vvi-u.5	100253796	uncharacterized LOC100253796
vvi-u.5	100247330	uncharacterized LOC100247330
vvi-u.5	100245004	uncharacterized LOC100245004
ppo-u.5	7495190	uncharacterized LOC7495190
ppo-u.5	7496833	uncharacterized LOC7496833
ppo-u.5	7460775	uncharacterized LOC7460775
mtr-u.5	11416585	uncharacterized LOC11416585
mtr-u.5	11436546	uncharacterized LOC11436546
ghi-r.1	107886562	uncharacterized LOC107886562
ghi-r.1	107960337	uncharacterized LOC107960337
bna-r.1	BNAC02G37080D	uncharacterized BNAC02G37080D
bna-r.1	106366174	uncharacterized LOC106366174
bna-r.1	106362424	ATP-citrate synthase alpha chain protein 1
sot-r.1	102603374	uncharacterized LOC102603374
sot-r.1	102598133	uncharacterized LOC102598133
cit-r.1	102624309	uncharacterized LOC102624309
cit-r.1	102621078	uncharacterized LOC102621078
cit-r.1	102626320	uncharacterized LOC102626320
nta-r.1	142171483	uncharacterized LOC142171483
nta-r.1	107825353	uncharacterized LOC107825353
cre-r.1	CHLRE_03g159700v5	uncharacterized protein

Top 50 coexpressed genes to 103639517 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103639517 (zma-u.5 coexpression data)

CoexMap"103639517"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0016020 [list] [network] membrane

(3751 genes)

IEA

GO MF

Protein

XP_008660485.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 5, E.R. 2, cyto 1, plas 1, extr 1, golg 1, golg_plas 1, cyto_plas 1

(predict for XP_008660485.1)

Subcellular
localization
TargetP

scret 9, mito 3

(predict for XP_008660485.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103639517	zma-r.6 for 103639517	zma-u.5 for 100277400	zma-u.5 for 100191945	zma-u.5 for 103626567	sbi-r.1 for 8078481	sbi-r.1 for 8072242	sbi-r.1 for 8069921	osa-u.5 for 4328191	osa-u.5 for 4327642	tae-r.2 for 123043882	tae-r.2 for 123060253	tae-r.2 for 123132033	hvu-r.1 for 123442791	hvu-r.1 for 123425438	bdi-r.1 for 100846204	bdi-r.1 for 100836266	bdi-r.1 for 100829367	ath-u.5 for AT3G27770	ath-u.5 for AT5G62960	gma-u.5 for 100804037	gma-u.5 for 100815819	gma-u.5 for 100820116	sly-u.5 for 101250307	sly-u.5 for 101249270	sly-u.5 for 101253575	bra-r.6 for 117127409	bra-r.6 for 103873724	bra-r.6 for 103871849	vvi-u.5 for 100253796	vvi-u.5 for 100247330	vvi-u.5 for 100245004	ppo-u.5 for 7495190	ppo-u.5 for 7496833	ppo-u.5 for 7460775	mtr-u.5 for 11416585	mtr-u.5 for 11436546	ghi-r.1 for 107886562	ghi-r.1 for 107960337	bna-r.1 for BNAC02G37080D	bna-r.1 for 106366174	bna-r.1 for 106362424	sot-r.1 for 102603374	sot-r.1 for 102598133	cit-r.1 for 102624309	cit-r.1 for 102621078	cit-r.1 for 102626320	nta-r.1 for 142171483	nta-r.1 for 107825353	cre-r.1 for CHLRE_03g159700v5

Ortholog

Ortholog ID: 492

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC100277400

uncharacterized LOC103626567

uncharacterized LOC100277315

uncharacterized LOC8078481

uncharacterized LOC8072242

uncharacterized LOC8069921

uncharacterized LOC4327642

uncharacterized LOC4344161

uncharacterized LOC123043882

uncharacterized LOC123060253

uncharacterized LOC123142438

uncharacterized LOC123442791

uncharacterized LOC123403781

uncharacterized LOC100846204

uncharacterized LOC100836266

UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein

uncharacterized protein

uncharacterized LOC100799510

uncharacterized LOC100799543

uncharacterized LOC100781639

uncharacterized LOC101250307

uncharacterized LOC101260302

uncharacterized LOC101264013

uncharacterized LOC103871849

uncharacterized LOC100247330

uncharacterized LOC100245004

uncharacterized LOC100244799

uncharacterized LOC7495190

uncharacterized LOC7496833

uncharacterized LOC7460489

uncharacterized LOC11416585

uncharacterized LOC11436546

uncharacterized LOC25501487

uncharacterized LOC107960337

uncharacterized LOC107922691

uncharacterized LOC107892236

uncharacterized BNAC02G37080D

ATP-citrate synthase alpha chain protein 1

uncharacterized LOC106397761

uncharacterized LOC102592038

uncharacterized LOC102601267

uncharacterized LOC102624309

uncharacterized LOC102621078

uncharacterized LOC102626320

uncharacterized LOC107821592

uncharacterized LOC107802398

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	4
zma00710	Carbon fixation by Calvin cycle	4
zma01200	Carbon metabolism	4
zma00030	Pentose phosphate pathway	3
zma01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
zma00010	Glycolysis / Gluconeogenesis	2
zma00051	Fructose and mannose metabolism	2
zma00562	Inositol phosphate metabolism	2
zma00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2
sbi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	2
osa00900	Terpenoid backbone biosynthesis	2
osa00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2
osa04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00592	alpha-Linolenic acid metabolism	3
tae00030	Pentose phosphate pathway	3
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00561	Glycerolipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00561	Glycerolipid metabolism	2
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	7
sly04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	2
bra00300	Lysine biosynthesis	2
bra01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	3
vvi00561	Glycerolipid metabolism	2
vvi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	4
ppo00020	Citrate cycle (TCA cycle)	2
ppo00270	Cysteine and methionine metabolism	2
ppo00566	Sulfoquinovose metabolism	2
ppo00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	4
mtr03250	Viral life cycle - HIV-1	2
mtr03272	Virion - Hepatitis viruses	2
mtr04145	Phagosome	2
mtr04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	4
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00770	Pantothenate and CoA biosynthesis	4
ghi01240	Biosynthesis of cofactors	4
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00053	Ascorbate and aldarate metabolism	2
ghi00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00770	Pantothenate and CoA biosynthesis	4
ghi01240	Biosynthesis of cofactors	4
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00053	Ascorbate and aldarate metabolism	2
ghi00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	3
bna04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00020	Citrate cycle (TCA cycle)	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	5
sot04626	Plant-pathogen interaction	3
sot00190	Oxidative phosphorylation	2
sot04145	Phagosome	2
sot04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04142	Lysosome	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00071	Fatty acid degradation	7
cre01212	Fatty acid metabolism	7
cre04146	Peroxisome	7
cre00592	alpha-Linolenic acid metabolism	7
cre01200	Carbon metabolism	6

Expression

Expression pattern

Entrez Gene ID^*

100277400

103626567

100277315

8078481

8072242

8069921

4327642

4344161

123043882

123060253

123142438

123442791

123403781

100846204

100836266

836416

843387

100799510

100799543

100781639

101250307

101260302

101264013

103871849

100247330

100245004

100244799

7495190

7496833

7460489

11416585

11436546

25501487

107960337

107922691

107892236

106382141

106362424

106397761

102592038

102601267

102624309

102621078

102626320

107821592

107802398

5723003

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Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	2	3	2	3	2	3	3	3	3	3	2	2	3	2	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103639517 (zma-u.5 coexpression data)

Top 50 enrichment test to 103639517 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**