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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   103644014   phytochrome C 
 zma-r.6   103644014   phytochrome C 
 zma-u.5   115101004   uncharacterized LOC115101004 
 zma-u.5   100192976   phytochromeC2 
 zma-u.5   103643916   phytochrome A-like 
 osa-u.5   4334135   phytochrome C-like 
 osa-u.5   4333930   phytochrome A-like 
 ath-u.5   PHYC   phytochrome C 
 ath-u.5   PHYA   phytochrome A 
 gma-u.5   PHYA   phytochrome A 
 gma-u.5   PHYA3   phytochrome A-2-like 
 gma-u.5   E4   phytochrome A 
 sly-u.5   phyA   Phytochrome A 
 sly-u.5   PHYF   phytochrome F 
 vvi-u.5   100258014   phytochrome C 
 vvi-u.5   PHYA   phytochrome A 
 ppo-u.5   7482219   phytochrome A 
 mtr-u.5   11405950   phytochrome A 

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Top 50 coexpressed genes to 103644014 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103644014 (zma-u.5 coexpression data)

CoexMap"103644014"


zmaLOC103644014 | Entrez gene ID : 103644014      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 2 2 3 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009585 [list] [network] red, far-red light phototransduction  (6 genes)  IEA  
GO:0009584 [list] [network] detection of visible light  (8 genes)  IEA  
GO:0017006 [list] [network] protein-tetrapyrrole linkage  (9 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1994 genes)  IEA  
GO CC
GO MF
GO:0009881 [list] [network] photoreceptor activity  (10 genes)  IEA  
GO:0042803 [list] [network] protein homodimerization activity  (14 genes)  IEA  
GO:0000155 [list] [network] phosphorelay sensor kinase activity  (23 genes)  IEA  
Protein XP_008665426.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  mito 2,  cyto_mito 2,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_008665426.1)
Subcellular
localization
TargetP
mito 6,  chlo 5  (predict for XP_008665426.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
103644014

.
zma-r.6
for
103644014

.
zma-u.5
for
115101004

.
zma-u.5
for
100192976

.
zma-u.5
for
103643916

.
osa-u.5
for
4334135

.
osa-u.5
for
4333930

.
ath-u.5
for
PHYC

.
ath-u.5
for
PHYA

.
gma-u.5
for
PHYA

.
gma-u.5
for
PHYA3

.
gma-u.5
for
E4

.
sly-u.5
for
phyA

.
sly-u.5
for
PHYF

.
vvi-u.5
for
100258014

.
vvi-u.5
for
PHYA

.
ppo-u.5
for
7482219

.
mtr-u.5
for
11405950

.


Ortholog ID: 3383
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol PHYC PHYA PHYA3 PHYA PHYF phyA LOC4334135 LOC4333930 LOC103643916 LOC115101004 LOC103843346 LOC103868296 PHYA LOC100258014 LOC7482219 LOC11405950 LOC123105051 LOC123113346 LOC123452263 LOC123447547 LOC107923974 LOC107912456 LOC106346267 LOC106417700 LOC8059991 LOC8086232 C-PHYA LOC102595581 LOC102618478 LOC102616503 LOC100834357 LOC100836209 LOC107773723 LOC107827766
Function* phytochrome C phytochrome A phytochrome A-2-like phytochrome A phytochrome F Phytochrome A phytochrome C-like phytochrome A-like phytochrome A-like uncharacterized LOC115101004 phytochrome A phytochrome C phytochrome A phytochrome C phytochrome A phytochrome A phytochrome C phytochrome C phytochrome C phytochrome A type 3 phytochrome C-like phytochrome C phytochrome A phytochrome A phytochrome a phytochrome C type A phytochrome phytochrome C phytochrome C phytochrome A-2 phytochrome C phytochrome A type 3 phytochrome C phytochrome A1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
zma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 3
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00460 Cyanoamino acid metabolism 4
sbi00500 Starch and sucrose metabolism 4
sbi00999 Biosynthesis of various plant secondary metabolites 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04712 Circadian rhythm - plant 2
sot04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi00785 Lipoic acid metabolism 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta04148 Efferocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833570 837483 100791098 547810 101259349 544176 4334135 4333930 103643916 115101004 103843346 103868296 100240824 100258014 7482219 11405950 123105051 123113346 123452263 123447547 107923974 107912456 106346267 106417700 8059991 8086232 102577627 102595581 102618478 102616503 100834357 100836209 107773723 107827766
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