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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   103648088   replication factor C subunit 1 
 zma-r.6   103648088   replication factor C subunit 1 
 osa-u.5   4350754   replication factor C subunit 1-like 
 ath-u.5   RFC1   replication factor C1 
 gma-u.5   100802809   replication factor C subunit 1 
 gma-u.5   100790070   replication factor C subunit 1 
 sly-u.5   101249468   replication factor C subunit 1 
 vvi-u.5   100249625   replication factor C subunit 1 
 ppo-u.5   7486662   replication factor C subunit 1 
 mtr-u.5   25492173   replication factor C subunit 1 

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Top 50 coexpressed genes to 103648088 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103648088 (zma-u.5 coexpression data)

CoexMap"103648088"


zmaLOC103648088 | Entrez gene ID : 103648088      
Species zma osa ath gma sly vvi ppo mtr cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 2 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03030 [list] [network] DNA replication (56 genes)
zma03410 [list] [network] Base excision repair (53 genes)
zma03420 [list] [network] Nucleotide excision repair (94 genes)
zma03430 [list] [network] Mismatch repair (39 genes)
GO BP
GO:0006260 [list] [network] DNA replication  (150 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (335 genes)  IEA  
GO CC
GO:0005663 [list] [network] DNA replication factor C complex  (16 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0003689 [list] [network] DNA clamp loader activity  (18 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (485 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2473 genes)  IEA  
Protein XP_008670813.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_008670813.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for XP_008670813.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
103648088

.
zma-r.6
for
103648088

.
osa-u.5
for
4350754

.
ath-u.5
for
RFC1

.
gma-u.5
for
100802809

.
gma-u.5
for
100790070

.
sly-u.5
for
101249468

.
vvi-u.5
for
100249625

.
ppo-u.5
for
7486662

.
mtr-u.5
for
25492173

.


Ortholog ID: 10318
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna cre sbi sbi sot cit bdi nta nta
Symbol RFC1 LOC100790070 LOC100802809 LOC101249468 LOC4350754 LOC103648088 LOC103851417 LOC100249625 LOC7486662 LOC25492173 LOC123148292 LOC123170123 LOC123412767 LOC107927582 LOC121216233 LOC106427329 CHLRE_12g521200v5 LOC8071946 LOC8054977 LOC102604147 LOC102623585 LOC100841258 LOC107761191 LOC107763539
Function* replication factor C1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1-like replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 uncharacterized protein replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 7
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
osa03030 DNA replication 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 5
ppo03040 Spliceosome 5
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03013 Nucleocytoplasmic transport 3
mtr03015 mRNA surveillance pathway 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03015 mRNA surveillance pathway 2
bna04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 3
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03410 Base excision repair 2
cit03015 mRNA surveillance pathway 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832261 100790070 100802809 101249468 4350754 103648088 103851417 100249625 7486662 25492173 123148292 123170123 123412767 107927582 121216233 106427329 5722576 8071946 8054977 102604147 102623585 100841258 107761191 107763539
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