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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   103648775   probable cleavage and polyadenylation specificity factor subunit 1 
 zma-r.6   103648775   probable cleavage and polyadenylation specificity factor subunit 1 
 sbi-r.1   8069416   probable cleavage and polyadenylation specificity factor subunit 1 
 osa-u.5   9266269   probable cleavage and polyadenylation specificity factor subunit 1 
 tae-r.2   123051226   probable cleavage and polyadenylation specificity factor subunit 1 
 tae-r.2   123043369   probable cleavage and polyadenylation specificity factor subunit 1 
 tae-r.2   123187189   probable cleavage and polyadenylation specificity factor subunit 1 
 hvu-r.1   123424542   probable cleavage and polyadenylation specificity factor subunit 1 
 bdi-r.1   100831691   probable cleavage and polyadenylation specificity factor subunit 1 
 ath-u.5   CPSF160   cleavage and polyadenylation specificity factor 160 
 gma-u.5   100801803   cleavage and polyadenylation specificity factor subunit 1 
 gma-u.5   100785543   cleavage and polyadenylation specificity factor subunit 1 
 sly-u.5   101246111   cleavage and polyadenylation specificity factor subunit 1 
 bra-r.6   103852133   cleavage and polyadenylation specificity factor subunit 1 
 vvi-u.5   100256706   cleavage and polyadenylation specificity factor subunit 1 
 ppo-u.5   7464309   cleavage and polyadenylation specificity factor subunit 1 
 mtr-u.5   25497136   cleavage and polyadenylation specificity factor subunit 1 
 ghi-r.1   107888746   cleavage and polyadenylation specificity factor subunit 1 
 ghi-r.1   107892045   cleavage and polyadenylation specificity factor subunit 1 
 bna-r.1   106380994   cleavage and polyadenylation specificity factor subunit 1 
 bna-r.1   106415571   cleavage and polyadenylation specificity factor subunit 1 
 sot-r.1   102605072   cleavage and polyadenylation specificity factor subunit 1 
 cit-r.1   102624179   cleavage and polyadenylation specificity factor subunit 1 
 nta-r.1   107806979   cleavage and polyadenylation specificity factor subunit 1 
 nta-r.1   107767638   cleavage and polyadenylation specificity factor subunit 1 
 cre-r.1   CHLRE_13g573450v5   uncharacterized protein 

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Top 50 coexpressed genes to 103648775 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103648775 (zma-u.5 coexpression data)

CoexMap"103648775"


zmaLOC103648775 | Entrez gene ID : 103648775    
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 1 1 3 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03015 [list] [network] mRNA surveillance pathway (165 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0003676 [list] [network] nucleic acid binding  (4170 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4389 genes)  IEA  
Protein XP_020403945.1 [sequence] [blastp]
XP_020403946.1 [sequence] [blastp]
XP_020403947.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_020403945.1)
nucl 5,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_020403946.1)
nucl 4,  cyto 1,  E.R. 1,  cyto_E.R. 1,  chlo 1,  mito 1,  plas 1,  vacu 1,  chlo_mito 1,  cyto_pero 1,  mito_plas 1  (predict for XP_020403947.1)
Subcellular
localization
TargetP
other 5  (predict for XP_020403945.1)
other 5  (predict for XP_020403946.1)
other 5  (predict for XP_020403947.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
103648775
zma-r.6
for
103648775
sbi-r.1
for
8069416
osa-u.5
for
9266269
tae-r.2
for
123051226
tae-r.2
for
123043369
tae-r.2
for
123187189
hvu-r.1
for
123424542
bdi-r.1
for
100831691
ath-u.5
for
CPSF160
gma-u.5
for
100801803
gma-u.5
for
100785543
sly-u.5
for
101246111
bra-r.6
for
103852133
vvi-u.5
for
100256706
ppo-u.5
for
7464309
mtr-u.5
for
25497136
ghi-r.1
for
107888746
ghi-r.1
for
107892045
bna-r.1
for
106380994
bna-r.1
for
106415571
sot-r.1
for
102605072
cit-r.1
for
102624179
nta-r.1
for
107806979
nta-r.1
for
107767638
cre-r.1
for
CHLRE_13g573450v5


Ortholog ID: 10380
Species zma sbi osa tae tae tae hvu bdi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC103648775 LOC8069416 LOC9266269 LOC123051226 LOC123043369 LOC123187189 LOC123424542 LOC100831691 CPSF160 LOC100801803 LOC100785543 LOC101246111 LOC103852133 LOC100256706 LOC7464309 LOC25497136 LOC107888746 LOC107892045 LOC106380994 LOC106415571 LOC102605072 LOC102624179 LOC107806979 LOC107767638 CHLRE_13g573450v5
Function* probable cleavage and polyadenylation specificity factor subunit 1 probable cleavage and polyadenylation specificity factor subunit 1 probable cleavage and polyadenylation specificity factor subunit 1 probable cleavage and polyadenylation specificity factor subunit 1 probable cleavage and polyadenylation specificity factor subunit 1 probable cleavage and polyadenylation specificity factor subunit 1 probable cleavage and polyadenylation specificity factor subunit 1 probable cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor 160 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 cleavage and polyadenylation specificity factor subunit 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03450 Non-homologous end-joining 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03013 Nucleocytoplasmic transport 5
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu03013 Nucleocytoplasmic transport 3
hvu03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 6
ath03020 RNA polymerase 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma04120 Ubiquitin mediated proteolysis 3
gma03015 mRNA surveillance pathway 2
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 7
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
bra03013 Nucleocytoplasmic transport 4
bra04120 Ubiquitin mediated proteolysis 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi03440 Homologous recombination 2
vvi03040 Spliceosome 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 5
mtr03013 Nucleocytoplasmic transport 4
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi03013 Nucleocytoplasmic transport 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi03013 Nucleocytoplasmic transport 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 7
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 7
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 6
sot03015 mRNA surveillance pathway 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03015 mRNA surveillance pathway 3
cre00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103648775 8069416 9266269 123051226 123043369 123187189 123424542 100831691 835240 100801803 100785543 101246111 103852133 100256706 7464309 25497136 107888746 107892045 106380994 106415571 102605072 102624179 107806979 107767638 5719187
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