ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	103648841	protein SUBSTANDARD STARCH GRAIN 4, chloroplastic
zma-r.6	103648841	protein SUBSTANDARD STARCH GRAIN 4, chloroplastic
zma-u.5	103632223	protein SUBSTANDARD STARCH GRAIN 4, chloroplastic
zma-u.5	103649669	protein SUBSTANDARD STARCH GRAIN 4, chloroplastic
osa-u.5	4323878	Protein SUBSTANDARD STARCH GRAIN 4, chloroplastic
ath-u.5	emb2410	embryo defective 2410
gma-u.5	100779257	protein TIC236, chloroplastic-like
gma-u.5	100793039	protein TIC236, chloroplastic
gma-u.5	100796955	protein TIC236, chloroplastic
sly-u.5	101257991	protein TIC236, chloroplastic
vvi-u.5	100247424	protein TIC236, chloroplastic
ppo-u.5	7458992	protein TIC236, chloroplastic
mtr-u.5	25481915	protein TIC236, chloroplastic
mtr-u.5	11429977	protein TIC236, chloroplastic

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_008671460.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, cyto 2, chlo_mito 2

(predict for XP_008671460.2)

Subcellular
localization
TargetP

chlo 3

(predict for XP_008671460.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103648841	zma-r.6 for 103648841	zma-u.5 for 103632223	zma-u.5 for 103649669	osa-u.5 for 4323878	ath-u.5 for emb2410	gma-u.5 for 100779257	gma-u.5 for 100793039	gma-u.5 for 100796955	sly-u.5 for 101257991	vvi-u.5 for 100247424	ppo-u.5 for 7458992	mtr-u.5 for 25481915	mtr-u.5 for 11429977

Ortholog

Ortholog ID: 6227

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

emb2410

Function^*

protein SUBSTANDARD STARCH GRAIN 4, chloroplastic

uncharacterized LOC8056518

Protein SUBSTANDARD STARCH GRAIN 4, chloroplastic

protein SUBSTANDARD STARCH GRAIN 4, chloroplastic

uncharacterized LOC100830324

embryo defective 2410

protein TIC236, chloroplastic

uncharacterized LOC102582430

hypothetical protein

protein TIC236, chloroplastic-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2
ath03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma02010	ABC transporters	2
gma04146	Peroxisome	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3
ghi03440	Homologous recombination	2
ghi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	4
sot00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00310	Lysine degradation	2
nta02010	ABC transporters	2
nta04146	Peroxisome	2
nta03460	Fanconi anemia pathway	2
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00310	Lysine degradation	2
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2
nta04145	Phagosome	2

Expression

Expression pattern

Entrez Gene ID^*

103648841

103632223

8056518

4323878

123069001

123077531

123442983

100830324

817107

100788741

100796955

101257991

103864684

100247424

7458992

11429977

25481915

107901377

121218263

106391138

106446814

102582430

102627941

107772434

107777328

5726284

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103648841 (zma-u.5 coexpression data)

Top 50 enrichment test to 103648841 (zma-u.5 coexpression data)


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	4	1	1	3	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103648841 (zma-u.5 coexpression data)

Top 50 enrichment test to 103648841 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**