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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103830833   polyadenylate-binding protein 5 
 ath-u.5   PAB4   poly(A) binding protein 4 
 gma-u.5   100811385   polyadenylate-binding protein 2 
 gma-u.5   100808877   polyadenylate-binding protein 2 
 gma-u.5   100813735   polyadenylate-binding protein 2 
 vvi-u.5   100241923   polyadenylate-binding protein 2-like 
 vvi-u.5   100255846   polyadenylate-binding protein 2-like 
 vvi-u.5   100262903   polyadenylate-binding protein 2 
 ppo-u.5   7492048   polyadenylate-binding protein 8 
 ppo-u.5   7490046   polyadenylate-binding protein 8 
 sly-u.5   101258105   polyadenylate-binding protein 8-like 
 sly-u.5   101261596   polyadenylate-binding protein 2-like 
 sly-u.5   101264108   polyadenylate-binding protein 3 
 osa-u.5   4345242   polyadenylate-binding protein 2 
 osa-u.5   4346409   polyadenylate-binding protein 2 
 osa-u.5   4336331   polyadenylate-binding protein 2 
 zma-u.5   100502035   uncharacterized LOC100502035 
 zma-u.5   100285420   uncharacterized LOC100285420 
 zma-u.5   100383542   uncharacterized LOC100383542 

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Top 50 coexpressed genes to 103830833 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103830833 (bra-r.6 coexpression data)

CoexMap"103830833"


braLOC103830833 | Entrez gene ID : 103830833    
Species bra ath gma vvi ppo sly osa zma sbi nta mtr cre hvu cit bdi sot tae bna ghi
Paralog 1 1 3 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03015 [list] [network] mRNA surveillance pathway (205 genes)
brp03018 [list] [network] RNA degradation (187 genes)
GO BP
GO CC
GO:1990904 [list] [network] ribonucleoprotein complex  (1029 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1543 genes)  IEA  
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0003730 [list] [network] mRNA 3'-UTR binding  (8 genes)  IEA  
GO:0008266 [list] [network] poly(U) RNA binding  (8 genes)  IEA  
GO:0008143 [list] [network] poly(A) binding  (10 genes)  IEA  
Protein XP_009104896.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cyto 1,  mito 1,  E.R. 1,  pero 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_009104896.1)
Subcellular
localization
TargetP
scret 4  (predict for XP_009104896.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103830833

.
ath-u.5
for
PAB4

.
gma-u.5
for
100811385

.
gma-u.5
for
100808877

.
gma-u.5
for
100813735

.
vvi-u.5
for
100241923

.
vvi-u.5
for
100255846

.
vvi-u.5
for
100262903

.
ppo-u.5
for
7492048

.
ppo-u.5
for
7490046

.
sly-u.5
for
101258105

.
sly-u.5
for
101261596

.
sly-u.5
for
101264108

.
osa-u.5
for
4345242

.
osa-u.5
for
4346409

.
osa-u.5
for
4336331

.
zma-u.5
for
100502035

.
zma-u.5
for
100285420

.
zma-u.5
for
100383542

.


Ortholog ID: 542
Species ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit cit bdi bdi nta nta
Symbol PAB2 LOC100798998 LOC100780329 LOC101261596 LOC101258105 LOC4346409 LOC4345242 LOC100502035 LOC100383542 LOC103844362 LOC100241923 LOC100255846 LOC7467793 LOC18104862 LOC123154688 LOC123053837 LOC123411286 LOC123427184 LOC107894289 LOC107908893 LOC106391056 LOC106381077 CHLRE_01g039300v5 LOC110432373 LOC8075901 LOC102585145 PABP2 LOC102615487 LOC100828713 LOC100827201 LOC107813138 LOC107814429
Function* poly(A) binding protein 2 polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 8-like polyadenylate-binding protein 2 polyadenylate-binding protein 2 uncharacterized LOC100502035 uncharacterized LOC100383542 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 8 polyadenylate-binding protein 8 polyadenylate-binding protein 4 polyadenylate-binding protein 5-like uncharacterized protein polyadenylate-binding protein 2-like polyadenylate-binding protein 2 polyadenylate-binding protein 8-like poly A-binding protein 2 polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 5
ath00620 Pyruvate metabolism 4
ath00190 Oxidative phosphorylation 4
ath00020 Citrate cycle (TCA cycle) 3
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
osa03015 mRNA surveillance pathway 4
osa03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 5
osa04141 Protein processing in endoplasmic reticulum 3
osa03018 RNA degradation 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 6
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
vvi03010 Ribosome 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03015 mRNA surveillance pathway 4
ppo03018 RNA degradation 4
ppo01210 2-Oxocarboxylic acid metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03018 RNA degradation 3
tae04814 Motor proteins 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 6
tae03015 mRNA surveillance pathway 4
tae01230 Biosynthesis of amino acids 4
tae03018 RNA degradation 3
tae00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 4
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 7
bna00230 Purine metabolism 5
bna01232 Nucleotide metabolism 5
bna01240 Biosynthesis of cofactors 5
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 11
cre01230 Biosynthesis of amino acids 6
cre01210 2-Oxocarboxylic acid metabolism 3
cre03013 Nucleocytoplasmic transport 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi03010 Ribosome 2
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot01240 Biosynthesis of cofactors 3
sot00190 Oxidative phosphorylation 3
sot04145 Phagosome 3
sot01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 6
bdi03015 mRNA surveillance pathway 4
bdi03018 RNA degradation 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 14
bdi03015 mRNA surveillance pathway 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta01230 Biosynthesis of amino acids 2
nta03015 mRNA surveillance pathway 2
nta03018 RNA degradation 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 12
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829557 100798998 100780329 101261596 101258105 4346409 4345242 100502035 100383542 103844362 100241923 100255846 7467793 18104862 123154688 123053837 123411286 123427184 107894289 107908893 106391056 106381077 5715532 110432373 8075901 102585145 102577977 102615487 100828713 100827201 107813138 107814429
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