ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103833174	putative RNA-binding protein Luc7-like 2
bra-r.6	103851108	U1 snRNP-associated protein usp106
bna-r.1	106355978	putative RNA-binding protein Luc7-like 2
bna-r.1	106387725	putative RNA-binding protein Luc7-like 2
bna-r.1	106387727	putative RNA-binding protein Luc7-like 2
ath-u.5	UNE6	LUC7 related protein
ath-u.5	AT5G17440	LUC7 related protein
ghi-r.1	107952120	putative RNA-binding protein Luc7-like 2
ghi-r.1	107949509	putative RNA-binding protein Luc7-like 1
cit-r.1	102608140	uncharacterized LOC102608140
gma-u.5	100793888	putative RNA-binding protein Luc7-like 2-like
gma-u.5	100777711	putative RNA-binding protein Luc7-like 2
vvi-u.5	100254714	uncharacterized LOC100254714
ppo-u.5	7459230	uncharacterized LOC7459230
ppo-u.5	18104226	uncharacterized LOC18104226
mtr-u.5	11426052	luc7-like protein
sly-u.5	101247022	uncharacterized LOC101247022
sot-r.1	102579947	U1 snRNP-associated protein usp106-like
nta-r.1	107761079	U1 snRNP-associated protein usp106-like
nta-r.1	107765276	uncharacterized LOC107765276
nta-r.1	107832818	uncharacterized LOC107832818
osa-u.5	4329919	uncharacterized LOC4329919
osa-u.5	4334750	uncharacterized LOC4334750
zma-u.5	100282822	uncharacterized LOC100282822
zma-u.5	100191822	uncharacterized LOC100191822
zma-u.5	100273852	LUC7 related protein
tae-r.2	123114268	putative RNA-binding protein Luc7-like 2
tae-r.2	123127660	protein LUC7
tae-r.2	123137416	putative RNA-binding protein Luc7-like 2
hvu-r.1	123395044	U1 snRNP-associated protein usp106-like
hvu-r.1	123401349	putative RNA-binding protein Luc7-like 1
sbi-r.1	8072437	U1 snRNP-associated protein usp106
sbi-r.1	110436772	putative RNA-binding protein Luc7-like 1
bdi-r.1	100842882	putative RNA-binding protein Luc7-like 2
bdi-r.1	100826418	putative RNA-binding protein Luc7-like 2

Top 50 coexpressed genes to 103833174 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103833174 (bra-r.6 coexpression data)

CoexMap"103833174"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006376 [list] [network] mRNA splice site recognition

(12 genes)

IEA

GO CC

GO:0005685 [list] [network] U1 snRNP	(42 genes)	IEA
GO:0071004 [list] [network] U2-type prespliceosome	(45 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(432 genes)

IEA

Protein

XP_009107516.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 1, chlo 1, mito 1, plas 1, chlo_mito 1, cysk_nucl 1, mito_plas 1

(predict for XP_009107516.1)

Subcellular
localization
TargetP

other 8

(predict for XP_009107516.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103833174	bra-r.6 for 103851108	bna-r.1 for 106355978	bna-r.1 for 106387725	bna-r.1 for 106387727	ath-u.5 for UNE6	ath-u.5 for AT5G17440	ghi-r.1 for 107952120	ghi-r.1 for 107949509	cit-r.1 for 102608140	gma-u.5 for 100793888	gma-u.5 for 100777711	vvi-u.5 for 100254714	ppo-u.5 for 7459230	ppo-u.5 for 18104226	mtr-u.5 for 11426052	sly-u.5 for 101247022	sot-r.1 for 102579947	nta-r.1 for 107761079	nta-r.1 for 107765276	nta-r.1 for 107832818	osa-u.5 for 4329919	osa-u.5 for 4334750	zma-u.5 for 100282822	zma-u.5 for 100191822	zma-u.5 for 100273852	tae-r.2 for 123114268	tae-r.2 for 123127660	tae-r.2 for 123137416	hvu-r.1 for 123395044	hvu-r.1 for 123401349	sbi-r.1 for 8072437	sbi-r.1 for 110436772	bdi-r.1 for 100842882	bdi-r.1 for 100826418

Ortholog

Ortholog ID: 4914

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

UNE6

Function^*

putative RNA-binding protein Luc7-like 2

U1 snRNP-associated protein usp106

putative RNA-binding protein Luc7-like 2

U1 snRNP-associated protein usp106-like

LUC7 related protein

putative RNA-binding protein Luc7-like 2

putative RNA-binding protein Luc7-like 1

uncharacterized LOC102608140

putative RNA-binding protein Luc7-like 2-like

putative RNA-binding protein Luc7-like 2

uncharacterized LOC100254714

uncharacterized LOC7459230

uncharacterized LOC18104226

luc7-like protein

uncharacterized LOC101247022

U1 snRNP-associated protein usp106-like

uncharacterized LOC107765276

U1 snRNP-associated protein usp106-like

uncharacterized LOC4329919

uncharacterized LOC4334750

uncharacterized LOC100282822

uncharacterized LOC100191822

LUC7 related protein

putative RNA-binding protein Luc7-like 2

U1 snRNP-associated protein usp106-like

putative RNA-binding protein Luc7-like 1

U1 snRNP-associated protein usp106

putative RNA-binding protein Luc7-like 1

putative RNA-binding protein Luc7-like 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6
bna03013	Nucleocytoplasmic transport	3
bna03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	9
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3
ghi03040	Spliceosome	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	3
ghi03040	Spliceosome	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03082	ATP-dependent chromatin remodeling	3
gma04141	Protein processing in endoplasmic reticulum	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma03013	Nucleocytoplasmic transport	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	6
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	6
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	6
osa04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma04120	Ubiquitin mediated proteolysis	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	7
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	5
hvu03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6

Expression

Expression pattern

Entrez Gene ID^*

103833174

103851108

106355978

106387725

106407173

821276

831610

107952120

107949509

102608140

100793888

100777711

100254714

7459230

18104226

11426052

101247022

102579947

107761079

107765276

107765649

4329919

4334750

100282822

100191822

100273852

123114268

123144763

123087670

123395044

123401349

8072437

110436772

100842882

100826418

The preparation time of this page was 0.1 [sec].


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	3	2	2	1	2	1	2	1	1	1	3	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103833174 (bra-r.6 coexpression data)

Top 50 enrichment test to 103833174 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**