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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AP1   K-box region and MADS-box transcription factor family protein 
 ath-u.5   AGL8   AGAMOUS-like 8 
 gma-u.5   100805348   truncated transcription factor CAULIFLOWER A 
 gma-u.5   AP1   MADS-box transcription factor 
 gma-u.5   FULC   MADS-box protein FULc 
 vvi-u.5   VFUL-L   FUL-like protein 
 vvi-u.5   100257072   truncated transcription factor CAULIFLOWER A 
 vvi-u.5   AP1   apetala1 
 ppo-u.5   7468138   truncated transcription factor CAULIFLOWER A 
 mtr-u.5   25488419   truncated transcription factor CAULIFLOWER A 
 sly-u.5   FUL1   agamous-like MADS-box protein AGL8 homolog 
 sly-u.5   FUL2   transcription factor FRUITFULL 
 osa-u.5   4334140   MADS-box transcription factor 14-like 
 osa-u.5   4342214   MADS-box transcription factor 15-like 
 zma-u.5   541765   MADS3 
 zma-u.5   542032   m15 protein 
 zma-u.5   542041   m4 protein 

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Top 50 coexpressed genes to AP1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AP1 (ath-u.5 coexpression data)

CoexMap"103835484"


braLOC103835484 | Entrez gene ID : 103835484    
Species ath gma vvi ppo mtr sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 2 3 3 1 1 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (248 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (391 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (478 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (727 genes)  IEA  
Protein XP_009109914.1 [sequence] [blastp]
XP_009109916.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_009109914.1)
nucl 10  (predict for XP_009109916.1)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for XP_009109914.1)
other 7,  mito 5  (predict for XP_009109916.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AP1
ath-u.5
for
AGL8
gma-u.5
for
100805348
gma-u.5
for
AP1
gma-u.5
for
FULC
vvi-u.5
for
VFUL-L
vvi-u.5
for
100257072
vvi-u.5
for
AP1
ppo-u.5
for
7468138
mtr-u.5
for
25488419
sly-u.5
for
FUL1
sly-u.5
for
FUL2
osa-u.5
for
4334140
osa-u.5
for
4342214
zma-u.5
for
541765
zma-u.5
for
542032
zma-u.5
for
542041


Ortholog ID: 1094
Species bna ath cit cit vvi vvi ppo ppo mtr sly sot sot osa osa zma zma tae tae sbi sbi bdi bdi
Symbol LOC106439964 AGL8 AP1 LOC102612359 LOC100257072 AP1 LOC7484716 LOC7468138 LOC25488419 FUL1 FUL2 FUL1 LOC4334140 LOC4342214 LOC542257 LOC541765 LOC780641 LOC543351 LOC8054531 LOC8085925 LOC100842079 LOC100845222
Function* agamous-like MADS-box protein AGL8 homolog AGAMOUS-like 8 APETALA1 truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A apetala1 truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A agamous-like MADS-box protein AGL8 homolog agamous-like MADS-box protein AGL8 homolog Agamous-like MADS-box protein AGL8 homolog MADS-box transcription factor 14-like MADS-box transcription factor 15-like zea apetala homolog 1 MADS3 MADS-box transcription factor 15 mads11 protein MADS-box transcription factor 15 MADS-box transcription factor 14 MADS-box transcription factor 14-like MADS-box transcription factor 15-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 2
sot00350 Tyrosine metabolism 2
sot00360 Phenylalanine metabolism 2
sot00410 beta-Alanine metabolism 2
sot00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106439964 836212 102578018 102612359 100257072 100232952 7484716 7468138 25488419 543839 102583048 102577795 4334140 4342214 542257 541765 780641 543351 8054531 8085925 100842079 100845222
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