ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103835924	eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like
bra-r.6	103872579	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
bra-r.6	103842720	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
bna-r.1	106427156	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
bna-r.1	106369044	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
bna-r.1	106359300	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
ath-u.5	AT1G18070	Translation elongation factor EF1A/initiation factor IF2gamma family protein
ghi-r.1	107890842	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
ghi-r.1	107898132	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
ghi-r.1	107904667	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
cit-r.1	102608389	uncharacterized LOC102608389
gma-u.5	100793653	elongation factor 1-alpha
gma-u.5	100784412	elongation factor 1-alpha
vvi-u.5	100249117	uncharacterized LOC100249117
ppo-u.5	7477758	uncharacterized LOC7477758
ppo-u.5	112323229	uncharacterized LOC112323229
mtr-u.5	25496771	eukaryotic peptide chain release factor GTP-binding subunit
mtr-u.5	11409629	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
sly-u.5	101244963	uncharacterized LOC101244963
sot-r.1	102605140	eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like
sot-r.1	102584824	eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like
nta-r.1	107797412	uncharacterized LOC107797412
nta-r.1	107790262	uncharacterized LOC107790262
nta-r.1	107788982	eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like
osa-u.5	4329282	uncharacterized LOC4329282
osa-u.5	4335338	uncharacterized LOC4335338
zma-u.5	103646667	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
zma-u.5	100384492	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
tae-r.2	123043472	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
tae-r.2	123051331	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
tae-r.2	100125704	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
hvu-r.1	123424567	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
sbi-r.1	8081781	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
sbi-r.1	8069429	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
bdi-r.1	100841181	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
bdi-r.1	100835861	eukaryotic peptide chain release factor GTP-binding subunit ERF3A
cre-r.1	CHLRE_06g284750v5	uncharacterized protein

Top 50 coexpressed genes to 103835924 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103835924 (bra-r.6 coexpression data)

CoexMap"103835924"

[Cytoscape]

Annotation

functional annotation

KEGG

brp03015 [list] [network] mRNA surveillance pathway (205 genes)

GO BP

GO:0006415 [list] [network] translational termination	(22 genes)	IEA
GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	(44 genes)	IEA
GO:0006412 [list] [network] translation	(893 genes)	IEA

GO CC

GO:0018444 [list] [network] translation release factor complex

(6 genes)

IEA

GO MF

GO:0003747 [list] [network] translation release factor activity	(14 genes)	IEA
GO:0003924 [list] [network] GTPase activity	(332 genes)	IEA
GO:0005525 [list] [network] GTP binding	(380 genes)	IEA

Protein

XP_018509553.1 [sequence] [blastp]

Subcellular
localization
wolf

cysk 8, cyto 1

(predict for XP_018509553.1)

Subcellular
localization
TargetP

other 8

(predict for XP_018509553.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103835924	bra-r.6 for 103872579	bra-r.6 for 103842720	bna-r.1 for 106427156	bna-r.1 for 106369044	bna-r.1 for 106359300	ath-u.5 for AT1G18070	ghi-r.1 for 107890842	ghi-r.1 for 107898132	ghi-r.1 for 107904667	cit-r.1 for 102608389	gma-u.5 for 100793653	gma-u.5 for 100784412	vvi-u.5 for 100249117	ppo-u.5 for 7477758	ppo-u.5 for 112323229	mtr-u.5 for 25496771	mtr-u.5 for 11409629	sly-u.5 for 101244963	sot-r.1 for 102605140	sot-r.1 for 102584824	nta-r.1 for 107797412	nta-r.1 for 107790262	nta-r.1 for 107788982	osa-u.5 for 4329282	osa-u.5 for 4335338	zma-u.5 for 103646667	zma-u.5 for 100384492	tae-r.2 for 123043472	tae-r.2 for 123051331	tae-r.2 for 100125704	hvu-r.1 for 123424567	sbi-r.1 for 8081781	sbi-r.1 for 8069429	bdi-r.1 for 100841181	bdi-r.1 for 100835861	cre-r.1 for CHLRE_06g284750v5

Ortholog

Ortholog ID: 4820

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like

eukaryotic peptide chain release factor GTP-binding subunit ERF3A

Translation elongation factor EF1A/initiation factor IF2gamma family protein

eukaryotic peptide chain release factor GTP-binding subunit ERF3A

uncharacterized LOC102608389

elongation factor 1-alpha

uncharacterized LOC100249117

uncharacterized LOC7477758

uncharacterized LOC112323229

eukaryotic peptide chain release factor GTP-binding subunit

eukaryotic peptide chain release factor GTP-binding subunit ERF3A

uncharacterized LOC101244963

eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like

uncharacterized LOC107797412

eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like

uncharacterized LOC107781036

uncharacterized LOC4329282

uncharacterized LOC4335338

eukaryotic peptide chain release factor GTP-binding subunit ERF3A

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2
ath03040	Spliceosome	2
ath03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	6
gma03015	mRNA surveillance pathway	3
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03015	mRNA surveillance pathway	4
gma03013	Nucleocytoplasmic transport	3
gma00010	Glycolysis / Gluconeogenesis	2
gma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	4
ppo04145	Phagosome	4
ppo04142	Lysosome	2
ppo04517	IgSF CAM signaling	2
ppo04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo00190	Oxidative phosphorylation	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr00330	Arginine and proline metabolism	3
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	4
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2
nta03250	Viral life cycle - HIV-1	2
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03083	Polycomb repressive complex	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	3
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma00970	Aminoacyl-tRNA biosynthesis	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	9
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi04120	Ubiquitin mediated proteolysis	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	3
sbi03083	Polycomb repressive complex	2
sbi04144	Endocytosis	2
sbi03050	Proteasome	2
sbi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2
bdi03015	mRNA surveillance pathway	2
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00970	Aminoacyl-tRNA biosynthesis	8

Expression

Expression pattern

Entrez Gene ID^*

103835924

103872579

103842720

106427156

106369044

106359300

838387

107890842

107898132

107904667

102608389

100793653

100784412

100249117

7477758

112323229

25496771

11409629

101244963

102605140

102584824

107797412

107788982

107781036

4329282

4335338

103646667

100384492

123043472

123051331

100125704

123424567

8081781

8069429

100841181

100835861

5720986

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Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	1	3	1	2	1	2	2	1	2	3	2	2	3	1	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103835924 (bra-r.6 coexpression data)

Top 50 enrichment test to 103835924 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**