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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6  103839510  nuclear transcription factor Y subunit B-6 
 bra-r.6  103829359  nuclear transcription factor Y subunit B-9 
 bna-r.1  125575342  nuclear transcription factor Y subunit B-9-like 
 bna-r.1  106454772  nuclear transcription factor Y subunit B-9 
 bna-r.1  106432034  nuclear transcription factor Y subunit B-6 
 ath-u.5  NF-YB6  nuclear factor Y, subunit B6 
 ath-u.5  LEC1  Histone superfamily protein 
 ghi-r.1  107905698  nuclear transcription factor Y subunit B-6 
 cit-r.1  102610438  nuclear transcription factor Y subunit B-6 
 gma-u.5  LEC1-A  transcription factor LEC1-A 
 gma-u.5  LEC1-B  nuclear transcription factor Y subunit B-6-like 
 vvi-u.5  100855401  nuclear transcription factor Y subunit B-6 
 sot-r.1  102592041  nuclear transcription factor Y subunit B-1-like 
 zma-u.5  103654015  nuclear transcription factor Y subunit B-2 
 zma-u.5  542498  leafy cotyledon 
 bdi-r.1  100830019  nuclear transcription factor Y subunit B-3 

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Top 50 coexpressed genes to 103839510 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103839510 (bra-r.6 coexpression data)

CoexMap"103839510"


braLOC103839510 | Entrez gene ID : 103839510
Species bra bna ath ghi cit gma vvi sot zma bdi sbi cre ppo mtr tae sly osa nta hvu
Paralog 2 3 2 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (676 genes)  IEA  
GO CC
GO:0016602 [list] [network] CCAAT-binding factor complex  (33 genes)  IEA  
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0001228 [list] [network] DNA-binding transcription activator activity, RNA polymerase II-specific  (25 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (123 genes)  IEA  
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (391 genes)  IEA  
Protein XP_033136878.1 [sequence] [blastp]
XP_033136879.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  mito 2,  cysk_nucl 2,  cyto 1,  mito_plas 1  (predict for XP_033136878.1)
nucl 4,  mito 2,  cysk_nucl 2,  cyto 1,  mito_plas 1  (predict for XP_033136879.1)
Subcellular
localization
TargetP
other 6  (predict for XP_033136878.1)
other 6  (predict for XP_033136879.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

bra-r.6
for
103839510


bra-r.6
for
103829359


bna-r.1
for
125575342


bna-r.1
for
106454772


bna-r.1
for
106432034


ath-u.5
for
NF-YB6


ath-u.5
for
LEC1


ghi-r.1
for
107905698


cit-r.1
for
102610438


gma-u.5
for
LEC1-A


gma-u.5
for
LEC1-B


vvi-u.5
for
100855401


sot-r.1
for
102592041


zma-u.5
for
103654015


zma-u.5
for
542498


bdi-r.1
for
100830019



Ortholog ID: 3046
Species bra bra bna bna bna ath ath ghi cit gma gma vvi sot zma zma bdi
Symbol LOC103839510 LOC103829359 LOC106432034 LOC106418177 LOC106425624 NF-YB6 LEC1 LOC121229421 LOC102610438 LEC1-B LOC547959 LOC100855401 LOC102592041 LOC103654015 LOC542498 LOC100830019
Function* nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-9 nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-9-like nuclear factor Y, subunit B6 Histone superfamily protein nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-6-like nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-1-like nuclear transcription factor Y subunit B-2 leafy cotyledon nuclear transcription factor Y subunit B-3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00910 Nitrogen metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103839510 103829359 106432034 106418177 106425624 834818 838800 121229421 102610438 100800011 547959 100855401 102592041 103654015 542498 100830019
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