ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103841732	DEAD-box ATP-dependent RNA helicase 52
bra-r.6	103841729	DEAD-box ATP-dependent RNA helicase 11
bra-r.6	103830164	DEAD-box ATP-dependent RNA helicase 11
bra-r.6	103830168	DEAD-box ATP-dependent RNA helicase 52
bna-r.1	106353186	DEAD-box ATP-dependent RNA helicase 52
bna-r.1	106396317	DEAD-box ATP-dependent RNA helicase 52-like
bna-r.1	106391721	DEAD-box ATP-dependent RNA helicase 37
ath-u.5	AT2G42520	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT3G58510	DEA(D/H)-box RNA helicase family protein
ath-u.5	AT3G58570	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ghi-r.1	107922187	DEAD-box ATP-dependent RNA helicase 37
ghi-r.1	107909218	DEAD-box ATP-dependent RNA helicase 52C
ghi-r.1	107924168	DEAD-box ATP-dependent RNA helicase 37
cit-r.1	102613246	DEAD-box ATP-dependent RNA helicase 37-like
cit-r.1	102614023	DEAD-box ATP-dependent RNA helicase 37-like
gma-u.5	100800039	DEAD-box ATP-dependent RNA helicase 37
gma-u.5	100795756	DEAD-box ATP-dependent RNA helicase 37
gma-u.5	100784557	DEAD-box ATP-dependent RNA helicase 52C
vvi-u.5	100245822	DEAD-box ATP-dependent RNA helicase 52C
vvi-u.5	100250337	DEAD-box ATP-dependent RNA helicase 37
vvi-u.5	100240950	DEAD-box ATP-dependent RNA helicase 37
ppo-u.5	7457715	DEAD-box ATP-dependent RNA helicase 37
ppo-u.5	7479507	DEAD-box ATP-dependent RNA helicase 37-like
ppo-u.5	7463584	DEAD-box ATP-dependent RNA helicase 37
mtr-u.5	25483582	DEAD-box ATP-dependent RNA helicase 37
mtr-u.5	11443667	DEAD-box ATP-dependent RNA helicase 52B
mtr-u.5	11427011	DEAD-box ATP-dependent RNA helicase 52C
sly-u.5	101244218	DEAD-box ATP-dependent RNA helicase 37
sly-u.5	101263192	DEAD-box ATP-dependent RNA helicase 37-like
sot-r.1	102596159	DEAD-box ATP-dependent RNA helicase 37-like
sot-r.1	102604430	DEAD-box ATP-dependent RNA helicase 11-like
nta-r.1	107793153	DEAD-box ATP-dependent RNA helicase 11
nta-r.1	107794592	DEAD-box ATP-dependent RNA helicase 37
nta-r.1	107796025	DEAD-box ATP-dependent RNA helicase 37
osa-u.5	4334493	DEAD-box ATP-dependent RNA helicase 37-like
osa-u.5	4341457	DEAD-box ATP-dependent RNA helicase 52A-like
osa-u.5	4342669	DEAD-box ATP-dependent RNA helicase 52B-like
zma-u.5	100501699	uncharacterized LOC100501699
zma-u.5	100381785	uncharacterized LOC100381785
zma-u.5	100279527	putative DEAD-box ATP-dependent RNA helicase family protein
tae-r.2	123091594	DEAD-box ATP-dependent RNA helicase 52C
tae-r.2	123169162	DEAD-box ATP-dependent RNA helicase 52A
tae-r.2	123096956	DEAD-box ATP-dependent RNA helicase 52C
hvu-r.1	123448365	DEAD-box ATP-dependent RNA helicase 52C-like
hvu-r.1	123452849	DEAD-box ATP-dependent RNA helicase 37-like
sbi-r.1	8066673	DEAD-box ATP-dependent RNA helicase 52C
sbi-r.1	110433378	DEAD-box ATP-dependent RNA helicase 37-like
bdi-r.1	100844508	DEAD-box ATP-dependent RNA helicase 52C
bdi-r.1	104581299	DEAD-box ATP-dependent RNA helicase 52A
bdi-r.1	100829994	DEAD-box ATP-dependent RNA helicase 37
cre-r.1	CHLRE_10g427700v5	uncharacterized protein

Top 50 coexpressed genes to 103841732 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103841732 (bra-r.6 coexpression data)

CoexMap"103841732"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(4801 genes)

IEA

GO MF

GO:0003724 [list] [network] RNA helicase activity	(92 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1857 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2916 genes)	IEA

Protein

XP_009116534.2 [sequence] [blastp]
XP_009116535.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 2, nucl 2, pero 1, chlo_mito 1	(predict for XP_009116534.2)
cyto 4, chlo 2, nucl 2, pero 1, chlo_mito 1	(predict for XP_009116535.2)

Subcellular
localization
TargetP

chlo 8, other 4	(predict for XP_009116534.2)
chlo 8, other 4	(predict for XP_009116535.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103841732	bra-r.6 for 103841729	bra-r.6 for 103830164	bra-r.6 for 103830168	bna-r.1 for 106353186	bna-r.1 for 106396317	bna-r.1 for 106391721	ath-u.5 for AT2G42520	ath-u.5 for AT3G58510	ath-u.5 for AT3G58570	ghi-r.1 for 107922187	ghi-r.1 for 107909218	ghi-r.1 for 107924168	cit-r.1 for 102613246	cit-r.1 for 102614023	gma-u.5 for 100800039	gma-u.5 for 100795756	gma-u.5 for 100784557	vvi-u.5 for 100245822	vvi-u.5 for 100250337	vvi-u.5 for 100240950	ppo-u.5 for 7457715	ppo-u.5 for 7479507	ppo-u.5 for 7463584	mtr-u.5 for 25483582	mtr-u.5 for 11443667	mtr-u.5 for 11427011	sly-u.5 for 101244218	sly-u.5 for 101263192	sot-r.1 for 102596159	sot-r.1 for 102604430	nta-r.1 for 107793153	nta-r.1 for 107794592	nta-r.1 for 107796025	osa-u.5 for 4334493	osa-u.5 for 4341457	osa-u.5 for 4342669	zma-u.5 for 100501699	zma-u.5 for 100381785	zma-u.5 for 100279527	tae-r.2 for 123091594	tae-r.2 for 123169162	tae-r.2 for 123096956	hvu-r.1 for 123448365	hvu-r.1 for 123452849	sbi-r.1 for 8066673	sbi-r.1 for 110433378	bdi-r.1 for 100844508	bdi-r.1 for 104581299	bdi-r.1 for 100829994	cre-r.1 for CHLRE_10g427700v5

Ortholog

Ortholog ID: 1144

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

DEAD-box ATP-dependent RNA helicase 11

DEAD-box ATP-dependent RNA helicase 52

DEAD-box ATP-dependent RNA helicase 37

DEAD-box ATP-dependent RNA helicase 52

DEAD-box ATP-dependent RNA helicase 11

P-loop containing nucleoside triphosphate hydrolases superfamily protein

DEA(D/H)-box RNA helicase family protein

P-loop containing nucleoside triphosphate hydrolases superfamily protein

DEAD-box ATP-dependent RNA helicase 37

DEAD-box ATP-dependent RNA helicase 52C

DEAD-box ATP-dependent RNA helicase 37-like

DEAD-box ATP-dependent RNA helicase 37

DEAD-box ATP-dependent RNA helicase 52C

DEAD-box ATP-dependent RNA helicase 37

DEAD-box ATP-dependent RNA helicase 37-like

DEAD-box ATP-dependent RNA helicase 37

DEAD-box ATP-dependent RNA helicase 52B

DEAD-box ATP-dependent RNA helicase 52C

DEAD-box ATP-dependent RNA helicase 37

DEAD-box ATP-dependent RNA helicase 37-like

DEAD-box ATP-dependent RNA helicase 11-like

DEAD-box ATP-dependent RNA helicase 11

DEAD-box ATP-dependent RNA helicase 37

DEAD-box ATP-dependent RNA helicase 37-like

DEAD-box ATP-dependent RNA helicase 52B-like

DEAD-box ATP-dependent RNA helicase 52C

uncharacterized LOC100501699

uncharacterized LOC100381785

putative DEAD-box ATP-dependent RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 37

DEAD-box ATP-dependent RNA helicase 52A

DEAD-box ATP-dependent RNA helicase 52C

DEAD-box ATP-dependent RNA helicase 52C-like

DEAD-box ATP-dependent RNA helicase 37-like

DEAD-box ATP-dependent RNA helicase 52B-like

DEAD-box ATP-dependent RNA helicase 52C

DEAD-box ATP-dependent RNA helicase 52A

DEAD-box ATP-dependent RNA helicase 37

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	3
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	4
ath03250	Viral life cycle - HIV-1	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	3
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	3
ghi00970	Aminoacyl-tRNA biosynthesis	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	5
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	6
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03250	Viral life cycle - HIV-1	4
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	3
vvi01240	Biosynthesis of cofactors	2
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	5
ppo00510	N-Glycan biosynthesis	2
ppo01200	Carbon metabolism	2
ppo01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03030	DNA replication	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	3
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00592	alpha-Linolenic acid metabolism	3
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	3
nta03015	mRNA surveillance pathway	3
nta03040	Spliceosome	3
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	3
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma04120	Ubiquitin mediated proteolysis	2
zma03015	mRNA surveillance pathway	2
zma04382	Cornified envelope formation	2
zma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	3
zma00100	Steroid biosynthesis	2
zma00564	Glycerophospholipid metabolism	2
zma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	6
tae03018	RNA degradation	3
tae03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae04142	Lysosome	2
tae04144	Endocytosis	2
tae05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu00510	N-Glycan biosynthesis	2
hvu00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	5
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03015	mRNA surveillance pathway	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00970	Aminoacyl-tRNA biosynthesis	3
cre03013	Nucleocytoplasmic transport	2
cre01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

103830164

103830168

103865954

106353186

106368273

106353188

818852

825020

825026

107922187

107945507

121204761

102613246

102614023

100800039

100795756

100781668

100245822

100240950

100250155

7457715

7463584

7488045

25483582

11443667

11427011

101244218

101263192

102596159

102604430

107793153

107796025

107773699

4334493

4342669

4350856

100501699

100381785

100279527

123113829

123148152

123085867

123448365

123452849

110433378

110432556

100844508

104581299

100829994

5728159

The preparation time of this page was 0.4 [sec].


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	2	3	3	3	3	2	2	3	3	3	3	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103841732 (bra-r.6 coexpression data)

Top 50 enrichment test to 103841732 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**