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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103845018   cleavage and polyadenylation specificity factor subunit 6 
 bra-r.6   103851867   cleavage and polyadenylation specificity factor subunit CG7185 
 bra-r.6   103856971   cleavage and polyadenylation specificity factor subunit 6 
 bra-r.6   103871953   heterogeneous nuclear ribonucleoprotein 87F 
 bna-r.1   125600712   cleavage and polyadenylation specificity factor subunit 6-like 
 bna-r.1   106400908   heterogeneous nuclear ribonucleoprotein A1-like 
 bna-r.1   106390894   cleavage and polyadenylation specificity factor subunit 6-like 
 ath-u.5   AT5G55670   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT1G13190   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ghi-r.1   107951262   cleavage and polyadenylation specificity factor subunit 6 
 ghi-r.1   107898647   cleavage and polyadenylation specificity factor subunit 6 
 ghi-r.1   107912125   uncharacterized PE-PGRS family protein PE_PGRS54 
 cit-r.1   102628557   uncharacterized LOC102628557 
 cit-r.1   102628156   uncharacterized LOC102628156 
 gma-u.5   100813702   cleavage and polyadenylation specificity factor subunit 6 
 gma-u.5   100813748   uncharacterized PE-PGRS family protein PE_PGRS46 
 gma-u.5   100782869   cleavage and polyadenylation specificity factor subunit 6 
 vvi-u.5   100246290   uncharacterized LOC100246290 
 vvi-u.5   100268141   uncharacterized LOC100268141 
 ppo-u.5   7473194   uncharacterized LOC7473194 
 ppo-u.5   7460729   uncharacterized LOC7460729 
 mtr-u.5   25489149   uncharacterized PE-PGRS family protein PE_PGRS54 
 mtr-u.5   25489148   uncharacterized PE-PGRS family protein PE_PGRS54 
 sly-u.5   101251491   uncharacterized LOC101251491 
 sly-u.5   101251182   uncharacterized LOC101251182 
 sly-u.5   101251795   uncharacterized LOC101251795 
 sot-r.1   102583609   cleavage and polyadenylation specificity factor subunit 6 
 sot-r.1   102599228   cleavage and polyadenylation specificity factor subunit 6 
 nta-r.1   107759692   uncharacterized LOC107759692 
 nta-r.1   107772507   uncharacterized LOC107772507 
 nta-r.1   107819894   uncharacterized LOC107819894 
 osa-u.5   4347363   uncharacterized LOC4347363 
 osa-u.5   4345901   uncharacterized LOC4345901 
 zma-u.5   103641415   cleavage and polyadenylation specificity factor subunit 6 
 zma-u.5   100501712   uncharacterized LOC100501712 
 zma-u.5   103641426   cleavage and polyadenylation specificity factor subunit 6 
 tae-r.2   123104075   translation initiation factor IF-2 
 tae-r.2   123112299   cleavage and polyadenylation specificity factor subunit 6 
 tae-r.2   123121821   cleavage and polyadenylation specificity factor subunit 6 
 hvu-r.1   123399127   translation initiation factor IF-2-like 
 sbi-r.1   8067028   cleavage and polyadenylation specificity factor subunit 6 
 sbi-r.1   8055363   translation initiation factor IF-2 
 bdi-r.1   100838039   RNA-binding protein cabeza 
 bdi-r.1   100827188   cleavage and polyadenylation specificity factor subunit 6 
 cre-r.1   CHLRE_08g384950v5   uncharacterized protein 

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Top 50 coexpressed genes to 103845018 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103845018 (bra-r.6 coexpression data)

CoexMap"103845018"


braLOC103845018 | Entrez gene ID : 103845018    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 3 2 3 2 2 2 3 2 3 2 3 3 1 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03015 [list] [network] mRNA surveillance pathway (205 genes)
brp03250 [list] [network] Viral life cycle - HIV-1 (58 genes)
GO BP
GO:0110104 [list] [network] mRNA alternative polyadenylation  (4 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (12 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (432 genes)  IEA  
Protein XP_033138686.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for XP_033138686.1)
Subcellular
localization
TargetP
other 9  (predict for XP_033138686.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103845018
bra-r.6
for
103851867
bra-r.6
for
103856971
bra-r.6
for
103871953
bna-r.1
for
125600712
bna-r.1
for
106400908
bna-r.1
for
106390894
ath-u.5
for
AT5G55670
ath-u.5
for
AT1G13190
ghi-r.1
for
107951262
ghi-r.1
for
107898647
ghi-r.1
for
107912125
cit-r.1
for
102628557
cit-r.1
for
102628156
gma-u.5
for
100813702
gma-u.5
for
100813748
gma-u.5
for
100782869
vvi-u.5
for
100246290
vvi-u.5
for
100268141
ppo-u.5
for
7473194
ppo-u.5
for
7460729
mtr-u.5
for
25489149
mtr-u.5
for
25489148
sly-u.5
for
101251491
sly-u.5
for
101251182
sly-u.5
for
101251795
sot-r.1
for
102583609
sot-r.1
for
102599228
nta-r.1
for
107759692
nta-r.1
for
107772507
nta-r.1
for
107819894
osa-u.5
for
4347363
osa-u.5
for
4345901
zma-u.5
for
103641415
zma-u.5
for
100501712
zma-u.5
for
103641426
tae-r.2
for
123104075
tae-r.2
for
123112299
tae-r.2
for
123121821
hvu-r.1
for
123399127
sbi-r.1
for
8067028
sbi-r.1
for
8055363
bdi-r.1
for
100838039
bdi-r.1
for
100827188
cre-r.1
for
CHLRE_08g384950v5


Ortholog ID: 2432
Species bra bra bra bna bna bna ath ath ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol LOC103845018 LOC103851867 LOC103856971 LOC106371392 LOC106389765 LOC106380886 AT5G55670 AT1G13190 LOC107898647 LOC121209632 LOC107942520 LOC102628557 LOC102628156 LOC100813702 LOC100782869 LOC100811056 LOC100246290 LOC100268141 LOC7473194 LOC7460729 LOC25489149 LOC25489148 LOC101251491 LOC101251182 LOC104649492 LOC102583609 LOC102599228 LOC107759692 LOC107772507 LOC107801425 LOC4347363 LOC4345901 LOC103641415 LOC100501712 LOC103641426 LOC123104075 LOC123112299 LOC123121821 LOC123399127 LOC8067028 LOC8055363 LOC100838039 LOC100827188 CHLRE_08g384950v5
Function* cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit CG7185 cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit 6-like cleavage and polyadenylation specificity factor subunit 6-like RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein cleavage and polyadenylation specificity factor subunit 6 uncharacterized PE-PGRS family protein PE_PGRS54 uncharacterized PE-PGRS family protein PE_PGRS20 uncharacterized LOC102628557 uncharacterized LOC102628156 cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit 6 uncharacterized PE-PGRS family protein PE_PGRS46 uncharacterized LOC100246290 uncharacterized LOC100268141 uncharacterized LOC7473194 uncharacterized LOC7460729 uncharacterized PE-PGRS family protein PE_PGRS54 uncharacterized PE-PGRS family protein PE_PGRS54 uncharacterized LOC101251491 uncharacterized LOC101251182 uncharacterized LOC104649492 cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit 6 uncharacterized LOC107759692 uncharacterized LOC107772507 uncharacterized LOC107801425 uncharacterized LOC4347363 uncharacterized LOC4345901 cleavage and polyadenylation specificity factor subunit 6 uncharacterized LOC100501712 cleavage and polyadenylation specificity factor subunit 6 translation initiation factor IF-2 cleavage and polyadenylation specificity factor subunit 6 cleavage and polyadenylation specificity factor subunit 6 translation initiation factor IF-2-like cleavage and polyadenylation specificity factor subunit 6 translation initiation factor IF-2 RNA-binding protein cabeza cleavage and polyadenylation specificity factor subunit 6 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03015 mRNA surveillance pathway 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03250 Viral life cycle - HIV-1 6
bna04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03015 mRNA surveillance pathway 5
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03015 mRNA surveillance pathway 4
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 6
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 7
gma03040 Spliceosome 6
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
gma03015 mRNA surveillance pathway 6
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 6
gma03040 Spliceosome 6
gma03250 Viral life cycle - HIV-1 4
gma04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
vvi03015 mRNA surveillance pathway 3
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03015 mRNA surveillance pathway 3
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03015 mRNA surveillance pathway 3
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03040 Spliceosome 3
sly03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03015 mRNA surveillance pathway 4
sly03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
sly04075 Plant hormone signal transduction 2
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03015 mRNA surveillance pathway 4
nta03250 Viral life cycle - HIV-1 4
nta00270 Cysteine and methionine metabolism 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 8
osa03015 mRNA surveillance pathway 3
osa03013 Nucleocytoplasmic transport 2
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 3
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 4
zma03040 Spliceosome 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
zma03015 mRNA surveillance pathway 4
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03250 Viral life cycle - HIV-1 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03250 Viral life cycle - HIV-1 3
tae04136 Autophagy - other 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03250 Viral life cycle - HIV-1 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03015 mRNA surveillance pathway 2
sbi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03040 Spliceosome 3
sbi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103845018 103851867 103856971 106371392 106389765 106380886 835661 837877 107898647 121209632 107942520 102628557 102628156 100813702 100782869 100811056 100246290 100268141 7473194 7460729 25489149 25489148 101251491 101251182 104649492 102583609 102599228 107759692 107772507 107801425 4347363 4345901 103641415 100501712 103641426 123104075 123112299 123121821 123399127 8067028 8055363 100838039 100827188 66054544
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