ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103845425	AP2-like ethylene-responsive transcription factor TOE2
bra-r.6	103862143	floral homeotic protein APETALA 2
bra-r.6	103858289	ethylene-responsive transcription factor RAP2-7
bra-r.6	103851522	AP2-like ethylene-responsive transcription factor TOE2
bna-r.1	106423299	floral homeotic protein APETALA 2
bna-r.1	106437467	ethylene-responsive transcription factor RAP2-7
bna-r.1	106438341	ethylene-responsive transcription factor RAP2-7-like
ath-u.5	SMZ	Integrase-type DNA-binding superfamily protein
ath-u.5	TOE3	target of early activation tagged (EAT) 3
ath-u.5	RAP2.7	uncharacterized protein
ghi-r.1	107930677	ethylene-responsive transcription factor RAP2-7
ghi-r.1	107905271	APETALA2-like protein 3
ghi-r.1	107898078	floral homeotic protein APETALA 2
cit-r.1	102627474	AP2-like ethylene-responsive transcription factor TOE3
cit-r.1	102606994	ethylene-responsive transcription factor RAP2-7
cit-r.1	102621126	floral homeotic protein APETALA 2-like
gma-u.5	100792442	floral homeotic protein APETALA 2
gma-u.5	100794096	floral homeotic protein APETALA 2
gma-u.5	100797238	APETALA2-like protein 3
vvi-u.5	AP2	transcription factor APETALA2
vvi-u.5	100263240	AP2-like ethylene-responsive transcription factor TOE3
ppo-u.5	7465291	APETALA2-like protein 3
ppo-u.5	7469774	APETALA2-like protein 3
ppo-u.5	18100239	APETALA2-like protein 3
mtr-u.5	25493474	floral homeotic protein APETALA 2
mtr-u.5	11407832	floral homeotic protein APETALA 2
mtr-u.5	11425769	APETALA2-like protein 2
sly-u.5	AP2b	APETALA2-like protein AP2b
sly-u.5	AP2d	APETALA2-like protein AP2d
sly-u.5	AP2c	APETALA2-like protein AP2c
sot-r.1	102606071	ethylene-responsive transcription factor RAP2-7-like
sot-r.1	102605336	ethylene-responsive transcription factor RAP2-7-like
sot-r.1	102589826	AP2-like ethylene-responsive transcription factor TOE3
nta-r.1	107804251	floral homeotic protein APETALA 2-like
nta-r.1	107759353	ethylene-responsive transcription factor RAP2-7
osa-u.5	9271266	ethylene-responsive transcription factor RAP2-7
osa-u.5	4337654	AP2-like ethylene-responsive transcription factor TOE3
zma-u.5	100271892	sister of indeterminate spikelet 1
zma-u.5	100381947	uncharacterized LOC100381947
zma-u.5	100280414	uncharacterized LOC100280414
tae-r.2	543013	APETALA2-like protein 1
tae-r.2	543360	APETALA2-like protein 2
hvu-r.1	123453013	APETALA2-like protein 2
hvu-r.1	123403691	APETALA2-like protein 1
hvu-r.1	123409793	APETALA2-like protein 4
sbi-r.1	8057377	floral homeotic protein APETALA 2
sbi-r.1	8068151	ethylene-responsive transcription factor RAP2-7
sbi-r.1	8068364	ethylene-responsive transcription factor RAP2-7
bdi-r.1	100821738	floral homeotic protein APETALA 2
bdi-r.1	100828894	floral homeotic protein APETALA 2
bdi-r.1	100825522	AP2/ERF and B3 domain-containing transcription factor ARF14-like
cre-r.1	CHLRE_08g383000v5	uncharacterized protein
cre-r.1	CHLRE_01g009650v5	uncharacterized protein
cre-r.1	CHLRE_08g385350v5	uncharacterized protein

Top 50 coexpressed genes to 103845425 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103845425 (bra-r.6 coexpression data)

CoexMap"103845425"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(2595 genes)

IEA

GO CC

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(1840 genes)	IEA
GO:0003677 [list] [network] DNA binding	(3159 genes)	IEA

Protein

XP_009120529.1 [sequence] [blastp]
XP_009120530.1 [sequence] [blastp]
XP_033137848.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_009120529.1)
nucl 9	(predict for XP_009120530.1)
nucl 9	(predict for XP_033137848.1)

Subcellular
localization
TargetP

other 7	(predict for XP_009120529.1)
other 8	(predict for XP_009120530.1)
other 7	(predict for XP_033137848.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103845425	bra-r.6 for 103862143	bra-r.6 for 103858289	bra-r.6 for 103851522	bna-r.1 for 106423299	bna-r.1 for 106437467	bna-r.1 for 106438341	ath-u.5 for SMZ	ath-u.5 for TOE3	ath-u.5 for RAP2.7	ghi-r.1 for 107930677	ghi-r.1 for 107905271	ghi-r.1 for 107898078	cit-r.1 for 102627474	cit-r.1 for 102606994	cit-r.1 for 102621126	gma-u.5 for 100792442	gma-u.5 for 100794096	gma-u.5 for 100797238	vvi-u.5 for AP2	vvi-u.5 for 100263240	ppo-u.5 for 7465291	ppo-u.5 for 7469774	ppo-u.5 for 18100239	mtr-u.5 for 25493474	mtr-u.5 for 11407832	mtr-u.5 for 11425769	sly-u.5 for AP2b	sly-u.5 for AP2d	sly-u.5 for AP2c	sot-r.1 for 102606071	sot-r.1 for 102605336	sot-r.1 for 102589826	nta-r.1 for 107804251	nta-r.1 for 107759353	osa-u.5 for 9271266	osa-u.5 for 4337654	zma-u.5 for 100271892	zma-u.5 for 100381947	zma-u.5 for 100280414	tae-r.2 for 543013	tae-r.2 for 543360	hvu-r.1 for 123453013	hvu-r.1 for 123403691	hvu-r.1 for 123409793	sbi-r.1 for 8057377	sbi-r.1 for 8068151	sbi-r.1 for 8068364	bdi-r.1 for 100821738	bdi-r.1 for 100828894	bdi-r.1 for 100825522	cre-r.1 for CHLRE_08g383000v5	cre-r.1 for CHLRE_01g009650v5	cre-r.1 for CHLRE_08g385350v5

Ortholog

Ortholog ID: 395

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SMZ

SNZ

TOE2

AP2

AP2c

AP2e

Function^*

AP2-like ethylene-responsive transcription factor TOE2

AP2-like ethylene-responsive transcription factor TOE3

floral homeotic protein APETALA 2

floral homeotic protein APETALA 2-like

AP2-like ethylene-responsive transcription factor TOE3

Integrase-type DNA-binding superfamily protein

target of early activation tagged (EAT) 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

APETALA2-like protein 3

ethylene-responsive transcription factor RAP2-7

transcription factor APETALA2

ethylene-responsive transcription factor RAP2-7

APETALA2-like protein 3

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

ethylene-responsive transcription factor RAP2-7

APETALA2-like protein AP2c

APETALA2-like protein AP2e

ethylene-responsive transcription factor RAP2-7-like

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

APETALA2-like protein 3

sister of indeterminate spikelet 1

uncharacterized LOC100280414

glossy15

APETALA2-like protein 1

APETALA2-like protein 2

APETALA2-like protein 4

APETALA2-like protein 5

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

AP2/ERF and B3 domain-containing transcription factor ARF14-like

floral homeotic protein APETALA 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00030	Pentose phosphate pathway	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00920	Sulfur metabolism	9
ghi01320	Sulfur cycle	7
ghi00230	Purine metabolism	4
ghi00261	Monobactam biosynthesis	4
ghi00450	Selenocompound metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00592	alpha-Linolenic acid metabolism	5
cit04146	Peroxisome	3
cit00071	Fatty acid degradation	2
cit01040	Biosynthesis of unsaturated fatty acids	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	2
cit00071	Fatty acid degradation	2
cit00350	Tyrosine metabolism	2
cit00620	Pyruvate metabolism	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00640	Propanoate metabolism	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	2
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	4
sly00908	Zeatin biosynthesis	3
sly00996	Biosynthesis of various alkaloids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	2
sot03010	Ribosome	2
sot00785	Lipoic acid metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	4
zma00500	Starch and sucrose metabolism	2
zma01200	Carbon metabolism	2
zma01210	2-Oxocarboxylic acid metabolism	2
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre02010	ABC transporters	2

Expression

Expression pattern

Entrez Gene ID^*

103845425

103851522

103829531

106423299

125594129

106366778

824664

818510

836134

107959062

107931690

107913226

102627474

102606994

102622542

100797238

100808212

100788303

100268051

100246815

7465291

18100239

7489618

11407832

11417561

11406478

100736534

100736535

101259280

102605336

102582568

102579807

107764494

107803429

107810888

9269072

4342787

100271892

100280414

732805

543013

123123462

123453013

123409793

123428148

8057377

8068151

8068364

100825522

100831490

100839861

5719829

5725812

5725844

The preparation time of this page was 0.2 [sec].


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	2	3	3	3	3	2	2	3	2	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103845425 (bra-r.6 coexpression data)

Top 50 enrichment test to 103845425 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**