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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G19910   RNA-dependent RNA polymerase family protein 
 ath-u.5   AT2G19920   RNA-dependent RNA polymerase family protein 
 ath-u.5   AT2G19930   RNA-dependent RNA polymerase family protein 
 gma-u.5   RDR3   RNA-dependent RNA polymerase 
 vvi-u.5   100260997   probable RNA-dependent RNA polymerase 5 
 ppo-u.5   18100462   probable RNA-dependent RNA polymerase 5 
 ppo-u.5   18100983   probable RNA-dependent RNA polymerase 5 
 mtr-u.5   25496960   probable RNA-dependent RNA polymerase 5 
 mtr-u.5   11411705   probable RNA-dependent RNA polymerase 5 
 sly-u.5   Ty-1/Ty-3   RNA-dependent RNA polymerase 
 sly-u.5   101257834   probable RNA-dependent RNA polymerase 5 
 osa-u.5   4327336   probable RNA-dependent RNA polymerase 4 
 osa-u.5   4327335   probable RNA-dependent RNA polymerase 3 
 zma-u.5   103646829   probable RNA-dependent RNA polymerase 3 
 zma-u.5   100384503   uncharacterized LOC100384503 

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Top 50 coexpressed genes to AT2G19910 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G19910 (ath-u.5 coexpression data)

CoexMap"103847558"


braLOC103847558 | Entrez gene ID : 103847558    
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 1 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030422 [list] [network] siRNA processing  (18 genes)  IEA  
GO CC
GO:0031380 [list] [network] nuclear RNA-directed RNA polymerase complex  (9 genes)  IEA  
GO MF
GO:0003968 [list] [network] RNA-directed RNA polymerase activity  (9 genes)  IEA  
Protein XP_033138827.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 3,  nucl 1,  cyto_mito 1,  mito_plas 1  (predict for XP_033138827.1)
Subcellular
localization
TargetP
chlo 7,  mito 4  (predict for XP_033138827.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT2G19910
ath-u.5
for
AT2G19920
ath-u.5
for
AT2G19930
gma-u.5
for
RDR3
vvi-u.5
for
100260997
ppo-u.5
for
18100462
ppo-u.5
for
18100983
mtr-u.5
for
25496960
mtr-u.5
for
11411705
sly-u.5
for
Ty-1/Ty-3
sly-u.5
for
101257834
osa-u.5
for
4327336
osa-u.5
for
4327335
zma-u.5
for
103646829
zma-u.5
for
100384503


Ortholog ID: 2612
Species bra bra bna ath ath ghi ghi cit gma vvi ppo ppo mtr sly sly sot sot nta nta osa osa zma zma tae tae sbi sbi cre
Symbol LOC103828268 LOC103845422 LOC106357580 AT2G19910 AT2G19920 LOC107940156 LOC107932268 LOC102621864 RDR3 LOC100260997 LOC18100462 LOC18100983 LOC25496960 Ty-1/Ty-3 LOC101257834 LOC102579148 LOC102602961 LOC107828996 LOC107774542 LOC4327335 LOC4327336 LOC103646829 LOC100384503 LOC123069192 LOC123069194 LOC8084336 LOC8066011 CHLRE_03g206950v5
Function* probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 5 RNA-dependent RNA polymerase family protein RNA-dependent RNA polymerase family protein probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 3 RNA-dependent RNA polymerase probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 RNA-dependent RNA polymerase probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 putative RNA-dependent RNA polymerase 5 putative RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 4 probable RNA-dependent RNA polymerase 3 uncharacterized LOC100384503 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 3
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 9
sot04075 Plant hormone signal transduction 8
sot01200 Carbon metabolism 3
sot00270 Cysteine and methionine metabolism 2
sot00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103828268 103845422 106357580 816510 816511 107940156 107932268 102621864 100801632 100260997 18100462 18100983 25496960 101263417 101257834 102579148 102602961 107828996 107774542 4327335 4327336 103646829 100384503 123069192 123069194 8084336 8066011 5718835
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