ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103848030	40S ribosomal protein S23-2
ath-u.5	AT3G09680	Ribosomal protein S12/S23 family protein
ath-u.5	AT5G02960	Ribosomal protein S12/S23 family protein
gma-u.5	100500013	40S ribosomal protein S23
gma-u.5	100796694	40S ribosomal protein S23
gma-u.5	100776345	40S ribosomal protein S23-like
vvi-u.5	100265528	small ribosomal subunit protein uS12
vvi-u.5	100248226	small ribosomal subunit protein uS12
vvi-u.5	100242825	small ribosomal subunit protein uS12
ppo-u.5	7465301	40S ribosomal protein S23
ppo-u.5	7489626	40S ribosomal protein S23
ppo-u.5	7457888	40S ribosomal protein S23
mtr-u.5	25484043	40S ribosomal protein S23
mtr-u.5	11434751	40S ribosomal protein S23-2
sly-u.5	101257002	small ribosomal subunit protein uS12
sly-u.5	101252131	40S ribosomal protein S23
sly-u.5	101252449	small ribosomal subunit protein uS12
osa-u.5	4327414	40S ribosomal protein S23
osa-u.5	4334580	40S ribosomal protein S23
osa-u.5	9266509	40S ribosomal protein S23
zma-u.5	103630443	40S ribosomal protein S23
zma-u.5	101027156	40S ribosomal protein S23
zma-u.5	103644248	40S ribosomal protein S23

Top 50 coexpressed genes to 103848030 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103848030 (bra-r.6 coexpression data)

CoexMap"103848030"

[Cytoscape]

Annotation

functional annotation

KEGG

brp03010 [list] [network] Ribosome (2036 genes)

GO BP

GO:0006412 [list] [network] translation

(893 genes)

IEA

GO CC

GO:0022627 [list] [network] cytosolic small ribosomal subunit	(168 genes)	IEA
GO:0005840 [list] [network] ribosome	(658 genes)	IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(649 genes)

IEA

Protein

XP_009123272.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 9

(predict for XP_009123272.1)

Subcellular
localization
TargetP

mito 8, other 3

(predict for XP_009123272.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103848030	ath-u.5 for AT3G09680	ath-u.5 for AT5G02960	gma-u.5 for 100500013	gma-u.5 for 100796694	gma-u.5 for 100776345	vvi-u.5 for 100265528	vvi-u.5 for 100248226	vvi-u.5 for 100242825	ppo-u.5 for 7465301	ppo-u.5 for 7489626	ppo-u.5 for 7457888	mtr-u.5 for 25484043	mtr-u.5 for 11434751	sly-u.5 for 101257002	sly-u.5 for 101252131	sly-u.5 for 101252449	osa-u.5 for 4327414	osa-u.5 for 4334580	osa-u.5 for 9266509	zma-u.5 for 103630443	zma-u.5 for 101027156	zma-u.5 for 103644248

Ortholog

Ortholog ID: 1202

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

40S ribosomal protein S23-2

Ribosomal protein S12/S23 family protein

40S ribosomal protein S23

small ribosomal subunit protein uS12

40S ribosomal protein S23

40S ribosomal protein S23-2

40S ribosomal protein S23

small ribosomal subunit protein uS12

40S ribosomal protein S23

uncharacterized LOC102577739

small ribosomal subunit protein uS12

40S ribosomal protein S23

small ribosomal subunit protein uS12

40S ribosomal protein S23-like

40S ribosomal protein S23

ribosomal protein S23

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	14
bra03040	Spliceosome	4
bra03013	Nucleocytoplasmic transport	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	11
bna03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	5
ath03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	11
ghi00261	Monobactam biosynthesis	3
ghi00300	Lysine biosynthesis	3
ghi01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	10
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	16
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	10
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	20
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	16
nta03018	RNA degradation	3
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	20
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10
tae03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	13
hvu04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	18
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	19

Expression

Expression pattern

Entrez Gene ID^*

103859285

103848030

106372613

106424083

820125

831724

107905281

107904092

102622281

102627205

100796694

100500013

100265528

100242825

18100230

7465301

25484043

11434751

101252131

101257002

102606349

102577739

107812875

107811880

9266509

4348383

103625771

101027156

123059459

123123461

123453009

123398301

8057378

8072558

100832317

100832951

5716444

The preparation time of this page was 0.1 [sec].


Species	bra	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	2	3	3	3	2	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103848030 (bra-r.6 coexpression data)

Top 50 enrichment test to 103848030 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**