ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103848836	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
ath-u.5	ARD3	acireductone dioxygenase 3
ath-u.5	ATARD2	RmlC-like cupins superfamily protein
ath-u.5	ARD1	acireductone dioxygenase 1
gma-u.5	100500632	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
gma-u.5	100500592	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like protein
gma-u.5	100812492	putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
vvi-u.5	104879260	acireductone dioxygenase 1
vvi-u.5	100232920	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like
ppo-u.5	7467506	acireductone dioxygenase 2
ppo-u.5	7473428	acireductone dioxygenase 1
mtr-u.5	25485141	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
mtr-u.5	25485143	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
sly-u.5	ARD	acireductone dioxygenase
sly-u.5	101255136	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
osa-u.5	4348647	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like
zma-u.5	100216585	uncharacterized LOC100216585
zma-u.5	103643555	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

Top 50 coexpressed genes to 103848836 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103848836 (bra-r.6 coexpression data)

CoexMap"103848836"

[Cytoscape]

Annotation

functional annotation

KEGG

brp00270 [list] [network] Cysteine and methionine metabolism (193 genes)

GO BP

GO:0019509 [list] [network] L-methionine salvage from methylthioadenosine

(8 genes)

IEA

GO CC

GO MF

GO:0010309 [list] [network] acireductone dioxygenase [iron(II)-requiring] activity

(3 genes)

IEA

Protein

XP_009123910.1 [sequence] [blastp]
XP_033140625.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, pero 3, cyto 1, mito 1	(predict for XP_009123910.1)
chlo 4, mito 3, pero 2, cyto 1, E.R. 1, cyto_E.R. 1	(predict for XP_033140625.1)

Subcellular
localization
TargetP

scret 6	(predict for XP_009123910.1)
scret 6	(predict for XP_033140625.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103848836	ath-u.5 for ARD3	ath-u.5 for ATARD2	ath-u.5 for ARD1	gma-u.5 for 100500632	gma-u.5 for 100500592	gma-u.5 for 100812492	vvi-u.5 for 104879260	vvi-u.5 for 100232920	ppo-u.5 for 7467506	ppo-u.5 for 7473428	mtr-u.5 for 25485141	mtr-u.5 for 25485143	sly-u.5 for ARD	sly-u.5 for 101255136	osa-u.5 for 4348647	zma-u.5 for 100216585	zma-u.5 for 103643555

Ortholog

Ortholog ID: 2618

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

zma

tae

hvu

sbi

bdi

cre

Symbol

ARD3

ARD4

ARD

ARD

Function^*

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

acireductone dioxygenase 4

acireductone dioxygenase 4-like

acireductone dioxygenase 3

RmlC-like cupins superfamily protein

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

acireductone dioxygenase 1

acireductone dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like protein

putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase

acireductone dioxygenase 1

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like

acireductone dioxygenase 1

acireductone dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

acireductone dioxygenase

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

acireductone dioxygenase

acireductone dioxygenase 1

acireductone dioxygenase 2

uncharacterized LOC100216585

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	4
gma00520	Amino sugar and nucleotide sugar metabolism	4
gma01250	Biosynthesis of nucleotide sugars	4
gma00270	Cysteine and methionine metabolism	2
gma00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	2
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04146	Peroxisome	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	6
ppo00710	Carbon fixation by Calvin cycle	5
ppo00010	Glycolysis / Gluconeogenesis	2
ppo00030	Pentose phosphate pathway	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	4
ppo00965	Betalain biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	4
mtr00270	Cysteine and methionine metabolism	3
mtr04136	Autophagy - other	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00270	Cysteine and methionine metabolism	5
sly00480	Glutathione metabolism	3
sly00330	Arginine and proline metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00480	Glutathione metabolism	4
sot00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00906	Carotenoid biosynthesis	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	5
nta03040	Spliceosome	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	5
zma00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	2
tae04141	Protein processing in endoplasmic reticulum	2
tae04145	Phagosome	2
tae00270	Cysteine and methionine metabolism	2
tae00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00270	Cysteine and methionine metabolism	3
hvu03050	Proteasome	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00270	Cysteine and methionine metabolism	5
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00270	Cysteine and methionine metabolism	3
bdi00230	Purine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00270	Cysteine and methionine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

103871834

103848836

106455045

106409006

817180

834407

107929178

107928423

102624829

102625112

100500592

100306042

104879260

100232920

7473428

7467506

25485141

25485143

101255431

101255136

102577691

107794003

107794012

100216585

103643555

123130632

123130633

123449509

123449326

8059441

110431801

100837759

100828612

5719530

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Species	bra	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	3	3	2	2	2	2	1	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103848836 (bra-r.6 coexpression data)

Top 50 enrichment test to 103848836 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**