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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103855474   short-chain dehydrogenase TIC 32 B, chloroplastic 
 ath-u.5   AT2G37540   NAD(P)-binding Rossmann-fold superfamily protein 
 ath-u.5   AT4G11410   NAD(P)-binding Rossmann-fold superfamily protein 
 ath-u.5   AT4G23420   NAD(P)-binding Rossmann-fold superfamily protein 
 gma-u.5   100793781   short-chain dehydrogenase TIC 32, chloroplastic 
 gma-u.5   100794358   short-chain dehydrogenase TIC 32, chloroplastic 
 gma-u.5   100795299   retinol dehydrogenase 12-like 
 vvi-u.5   100264493   short-chain dehydrogenase TIC 32, chloroplastic 
 vvi-u.5   100252592   short-chain dehydrogenase TIC 32, chloroplastic 
 vvi-u.5   100253030   short-chain dehydrogenase TIC 32, chloroplastic 
 ppo-u.5   7487251   short-chain dehydrogenase TIC 32 B, chloroplastic 
 mtr-u.5   25496527   short-chain dehydrogenase TIC 32, chloroplastic 
 mtr-u.5   25502056   short-chain dehydrogenase TIC 32, chloroplastic 
 mtr-u.5   25496525   short-chain dehydrogenase TIC 32, chloroplastic 
 sly-u.5   101246319   short-chain dehydrogenase TIC 32, chloroplastic-like 
 sly-u.5   101263363   short-chain dehydrogenase TIC 32 B, chloroplastic 
 osa-u.5   4335398   short-chain dehydrogenase TIC 32, chloroplastic 
 osa-u.5   4347912   short-chain dehydrogenase TIC 32, chloroplastic 
 osa-u.5   4324493   short-chain dehydrogenase TIC 32 B, chloroplastic 
 zma-u.5   100500950   retinol dehydrogenase 11 
 zma-u.5   100282710   retinol dehydrogenase 12 
 zma-u.5   100272665   Short-chain dehydrogenase TIC 32 chloroplastic 

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Top 50 coexpressed genes to 103855474 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103855474 (bra-r.6 coexpression data)

CoexMap"103855474"


braLOC103855474 | Entrez gene ID : 103855474    
Species bra ath gma vvi ppo mtr sly osa zma bdi hvu cit bna sbi ghi sot nta cre tae
Paralog 1 3 3 3 1 3 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
Protein XP_009130709.1 [sequence] [blastp]
XP_018512562.1 [sequence] [blastp]
XP_018512563.1 [sequence] [blastp]
XP_018512566.1 [sequence] [blastp]
XP_033143831.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  pero 3,  chlo_mito 3,  cyto_mito 3,  mito_plas 3  (predict for XP_009130709.1)
mito 4,  nucl 1,  plas 1,  nucl_plas 1,  cyto 1,  vacu 1,  E.R. 1,  pero 1,  cysk_nucl 1,  golg_plas 1,  E.R._vacu 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_018512562.1)
mito 3,  plas 2,  nucl 1,  golg 1,  cyto_mito 1,  E.R._plas 1  (predict for XP_018512563.1)
mito 4,  nucl 3,  cyto 1,  pero 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1  (predict for XP_018512566.1)
pero 4,  mito 3,  nucl 2  (predict for XP_033143831.1)
Subcellular
localization
TargetP
other 6,  mito 6  (predict for XP_009130709.1)
other 6,  mito 6  (predict for XP_018512562.1)
other 6,  mito 6  (predict for XP_018512563.1)
other 6,  mito 6  (predict for XP_018512566.1)
other 6,  mito 6  (predict for XP_033143831.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103855474
ath-u.5
for
AT2G37540
ath-u.5
for
AT4G11410
ath-u.5
for
AT4G23420
gma-u.5
for
100793781
gma-u.5
for
100794358
gma-u.5
for
100795299
vvi-u.5
for
100264493
vvi-u.5
for
100252592
vvi-u.5
for
100253030
ppo-u.5
for
7487251
mtr-u.5
for
25496527
mtr-u.5
for
25502056
mtr-u.5
for
25496525
sly-u.5
for
101246319
sly-u.5
for
101263363
osa-u.5
for
4335398
osa-u.5
for
4347912
osa-u.5
for
4324493
zma-u.5
for
100500950
zma-u.5
for
100282710
zma-u.5
for
100272665


Ortholog ID: 223
Species bra bra bna bna ath ath ghi ghi cit cit gma vvi vvi ppo ppo mtr mtr sly sly sot nta nta osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre cre
Symbol LOC103833862 LOC103865606 LOC106443015 LOC106447367 AT5G50130 AT4G23420 LOC107901446 LOC107948830 LOC102607364 LOC102621246 LOC100785176 LOC100242214 LOC100264493 LOC7487251 LOC7458067 LOC25485056 LOC25485057 LOC101263363 LOC101257739 LOC102579773 LOC107817497 LOC107823666 LOC4347912 LOC100272665 LOC100282710 LOC123095563 LOC123095568 LOC123446804 LOC123442711 LOC8072772 LOC8073299 LOC100836169 LOC100827514 CHLRE_02g113652v5 CHLRE_09g398252v5
Function* short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32 B, chloroplastic short-chain dehydrogenase TIC 32 B, chloroplastic-like short-chain dehydrogenase TIC 32 B, chloroplastic-like NAD(P)-binding Rossmann-fold superfamily protein NAD(P)-binding Rossmann-fold superfamily protein short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32 B, chloroplastic short-chain dehydrogenase TIC 32 B, chloroplastic-like short-chain dehydrogenase TIC 32, chloroplastic-like short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32 B, chloroplastic short-chain dehydrogenase TIC 32 B, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32 B, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic-like short-chain dehydrogenase TIC 32 B, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic Short-chain dehydrogenase TIC 32 chloroplastic retinol dehydrogenase 12 short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32 B, chloroplastic-like short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic short-chain dehydrogenase TIC 32, chloroplastic uncharacterized LOC100827514 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 8
bra00196 Photosynthesis - antenna proteins 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 8
bna01240 Biosynthesis of cofactors 3
bna00905 Brassinosteroid biosynthesis 2
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 3
ghi00941 Flavonoid biosynthesis 3
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
ghi00944 Flavone and flavonol biosynthesis 2
ghi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 8
ghi04626 Plant-pathogen interaction 8
ghi01240 Biosynthesis of cofactors 3
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 2
cit04981 Folate transport and metabolism 2
cit00561 Glycerolipid metabolism 2
cit00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 5
cit00710 Carbon fixation by Calvin cycle 3
cit01230 Biosynthesis of amino acids 3
cit04712 Circadian rhythm - plant 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
vvi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00904 Diterpenoid biosynthesis 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00053 Ascorbate and aldarate metabolism 2
mtr01230 Biosynthesis of amino acids 2
mtr00030 Pentose phosphate pathway 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00630 Glyoxylate and dicarboxylate metabolism 5
sly01200 Carbon metabolism 5
sly00260 Glycine, serine and threonine metabolism 3
sly00670 One carbon pool by folate 3
sly00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 6
sly00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 6
nta01200 Carbon metabolism 6
nta04146 Peroxisome 6
nta00380 Tryptophan metabolism 2
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00062 Fatty acid elongation 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi02010 ABC transporters 3
sbi04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 3
cre03440 Homologous recombination 2
cre03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103833862 103865606 106443015 106447367 835078 828441 107901446 107948830 102607364 102621246 100785176 100242214 100264493 7487251 7458067 25485056 25485057 101263363 101257739 102579773 107817497 107823666 4347912 100272665 100282710 123095563 123095568 123446804 123442711 8072772 8073299 100836169 100827514 5725222 5720373
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