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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103855960   uncharacterized LOC103855960 
 ath-u.5   AT5G12220   las1-like family protein 
 gma-u.5   100818525   uncharacterized LOC100818525 
 gma-u.5   100775513   uncharacterized LOC100775513 
 vvi-u.5   100263330   pre-rRNA-processing protein las1 
 ppo-u.5   7463878   protein LAS1 
 ppo-u.5   7454880   uncharacterized LOC7454880 
 mtr-u.5   11432339   pre-rRNA-processing protein las1 
 sly-u.5   101262228   uncharacterized LOC101262228 
 osa-u.5   4351697   uncharacterized LOC4351697 
 zma-u.5   100279349   uncharacterized LOC100279349 

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Top 50 coexpressed genes to 103855960 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103855960 (bra-r.6 coexpression data)

CoexMap"103855960"


braLOC103855960 | Entrez gene ID : 103855960    
Species bra ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot sbi tae nta bna
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000460 [list] [network] maturation of 5.8S rRNA  (50 genes)  IEA  
GO:0000470 [list] [network] maturation of LSU-rRNA  (53 genes)  IEA  
GO CC
GO:0090730 [list] [network] Las1 complex  (1 genes)  IEA  
GO:0030687 [list] [network] preribosome, large subunit precursor  (47 genes)  IEA  
GO MF
GO:0004519 [list] [network] endonuclease activity  (349 genes)  IEA  
Protein XP_009131263.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_009131263.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_009131263.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103855960

.
ath-u.5
for
AT5G12220

.
gma-u.5
for
100818525

.
gma-u.5
for
100775513

.
vvi-u.5
for
100263330

.
ppo-u.5
for
7463878

.
ppo-u.5
for
7454880

.
mtr-u.5
for
11432339

.
sly-u.5
for
101262228

.
osa-u.5
for
4351697

.
zma-u.5
for
100279349

.


Ortholog ID: 9088
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G12220 LOC100775513 LOC100818525 LOC101262228 LOC4351697 LOC100279349 LOC103855960 LOC100263330 LOC7454880 LOC7463878 LOC11432339 LOC123079487 LOC123062350 LOC123444647 LOC107938582 LOC121223293 LOC125584071 LOC106420218 CHLRE_01g002201v5 LOC8055266 LOC102599960 LOC102625692 LOC100831838 LOC107760939 LOC107827832
Function* las1-like family protein uncharacterized LOC100775513 uncharacterized LOC100818525 uncharacterized LOC101262228 uncharacterized LOC4351697 uncharacterized LOC100279349 uncharacterized LOC103855960 pre-rRNA-processing protein las1 uncharacterized LOC7454880 protein LAS1 pre-rRNA-processing protein las1 uncharacterized LOC123079487 uncharacterized LOC123062350 uncharacterized LOC123444647 uncharacterized LOC107938582 uncharacterized LOC121223293 uncharacterized LOC125584071 uncharacterized LOC106420218 uncharacterized protein uncharacterized LOC8055266 uncharacterized LOC102599960 uncharacterized LOC102625692 uncharacterized LOC100831838 uncharacterized LOC107760939 uncharacterized LOC107827832
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr00230 Purine metabolism 2
mtr01232 Nucleotide metabolism 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
nta03020 RNA polymerase 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831096 100775513 100818525 101262228 4351697 100279349 103855960 100263330 7454880 7463878 11432339 123079487 123062350 123444647 107938582 121223293 125584071 106420218 66051896 8055266 102599960 102625692 100831838 107760939 107827832
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