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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103856310   CCR4-NOT transcription complex subunit 11 
 bra-r.6   103845837   CCR4-NOT transcription complex subunit 11 
 bna-r.1   106387787   CCR4-NOT transcription complex subunit 11 
 bna-r.1   106386580   CCR4-NOT transcription complex subunit 11-like 
 bna-r.1   106433866   CCR4-NOT transcription complex subunit 11 
 ath-u.5   AT5G18420   CCR4-NOT transcription complex subunit 
 ghi-r.1   107914462   CCR4-NOT transcription complex subunit 11 
 ghi-r.1   107897174   CCR4-NOT transcription complex subunit 11 
 cit-r.1   102613308   uncharacterized LOC102613308 
 gma-u.5   100804854   uncharacterized LOC100804854 
 gma-u.5   100779517   CCR4-NOT transcription complex subunit 11 
 vvi-u.5   100266477   uncharacterized LOC100266477 
 ppo-u.5   18099414   uncharacterized LOC18099414 
 ppo-u.5   7493535   uncharacterized LOC7493535 
 mtr-u.5   25482957   CCR4-NOT transcription complex subunit 11 
 sly-u.5   101252168   uncharacterized LOC101252168 
 sot-r.1   102580292   CCR4-NOT transcription complex subunit 11 
 nta-r.1   107778760   uncharacterized LOC107778760 
 nta-r.1   107815802   uncharacterized LOC107815802 
 osa-u.5   4350166   uncharacterized LOC4350166 
 osa-u.5   4351727   uncharacterized LOC4351727 
 zma-u.5   100280424   uncharacterized LOC100280424 
 zma-u.5   100277650   uncharacterized LOC100277650 
 zma-u.5   100193271   uncharacterized LOC100193271 
 tae-r.2   123091236   CCR4-NOT transcription complex subunit 11 
 tae-r.2   123096222   CCR4-NOT transcription complex subunit 11 
 tae-r.2   123102804   CCR4-NOT transcription complex subunit 11 
 hvu-r.1   123400175   CCR4-NOT transcription complex subunit 11-like 
 hvu-r.1   123447848   CCR4-NOT transcription complex subunit 11-like 
 sbi-r.1   110429785   CCR4-NOT transcription complex subunit 11 
 sbi-r.1   8057169   CCR4-NOT transcription complex subunit 11 
 bdi-r.1   100826492   CCR4-NOT transcription complex subunit 11 
 cre-r.1   CHLRE_17g726800v5   uncharacterized protein 

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Top 50 coexpressed genes to 103856310 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103856310 (bra-r.6 coexpression data)

CoexMap"103856310"


braLOC103856310 | Entrez gene ID : 103856310    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 3 1 2 1 2 1 2 1 1 1 2 2 3 3 2 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0017148 [list] [network] negative regulation of translation  (28 genes)  IEA  
GO:0006402 [list] [network] mRNA catabolic process  (121 genes)  IEA  
GO CC
GO:0030014 [list] [network] CCR4-NOT complex  (57 genes)  IEA  
GO MF
Protein XP_009131665.1 [sequence] [blastp]
XP_009131666.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4  (predict for XP_009131665.1)
nucl 5,  cyto 4  (predict for XP_009131666.1)
Subcellular
localization
TargetP
other 6  (predict for XP_009131665.1)
other 6  (predict for XP_009131666.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103856310
bra-r.6
for
103845837
bna-r.1
for
106387787
bna-r.1
for
106386580
bna-r.1
for
106433866
ath-u.5
for
AT5G18420
ghi-r.1
for
107914462
ghi-r.1
for
107897174
cit-r.1
for
102613308
gma-u.5
for
100804854
gma-u.5
for
100779517
vvi-u.5
for
100266477
ppo-u.5
for
18099414
ppo-u.5
for
7493535
mtr-u.5
for
25482957
sly-u.5
for
101252168
sot-r.1
for
102580292
nta-r.1
for
107778760
nta-r.1
for
107815802
osa-u.5
for
4350166
osa-u.5
for
4351727
zma-u.5
for
100280424
zma-u.5
for
100277650
zma-u.5
for
100193271
tae-r.2
for
123091236
tae-r.2
for
123096222
tae-r.2
for
123102804
hvu-r.1
for
123400175
hvu-r.1
for
123447848
sbi-r.1
for
110429785
sbi-r.1
for
8057169
bdi-r.1
for
100826492
cre-r.1
for
CHLRE_17g726800v5


Ortholog ID: 5376
Species bra bra bna bna bna ath ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi cre
Symbol LOC103856310 LOC103845837 LOC106387787 LOC106433866 LOC106416448 AT5G18420 LOC107914462 LOC107897174 LOC102613308 LOC100804854 LOC100779517 LOC100266477 LOC18099414 LOC7493535 LOC25482957 LOC101252168 LOC102580292 LOC107778760 LOC107815802 LOC4350166 LOC4351727 LOC100280424 LOC100277650 LOC100193271 LOC123091236 LOC123102804 LOC123110968 LOC123400175 LOC123447848 LOC110429785 LOC8057169 LOC100826492 CHLRE_17g726800v5
Function* CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11-like CCR4-NOT transcription complex subunit CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11 uncharacterized LOC102613308 uncharacterized LOC100804854 CCR4-NOT transcription complex subunit 11 uncharacterized LOC100266477 uncharacterized LOC18099414 uncharacterized LOC7493535 CCR4-NOT transcription complex subunit 11 uncharacterized LOC101252168 CCR4-NOT transcription complex subunit 11 uncharacterized LOC107778760 uncharacterized LOC107815802 uncharacterized LOC4350166 uncharacterized LOC4351727 uncharacterized LOC100280424 uncharacterized LOC100277650 uncharacterized LOC100193271 CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11-like CCR4-NOT transcription complex subunit 11-like CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11 CCR4-NOT transcription complex subunit 11 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 7
ghi04120 Ubiquitin mediated proteolysis 2
ghi03010 Ribosome 2
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 7
ghi04120 Ubiquitin mediated proteolysis 2
ghi03010 Ribosome 2
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03015 mRNA surveillance pathway 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 4
osa04144 Endocytosis 3
osa03060 Protein export 2
osa04136 Autophagy - other 2
osa04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
zma03440 Homologous recombination 2
zma03450 Non-homologous end-joining 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03082 ATP-dependent chromatin remodeling 3
tae03083 Polycomb repressive complex 3
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae04382 Cornified envelope formation 3
tae04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae00510 N-Glycan biosynthesis 3
tae00513 Various types of N-glycan biosynthesis 3
tae04141 Protein processing in endoplasmic reticulum 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103856310 103845837 106387787 106433866 106416448 831960 107914462 107897174 102613308 100804854 100779517 100266477 18099414 7493535 25482957 101252168 102580292 107778760 107815802 4350166 4351727 100280424 100277650 100193271 123091236 123102804 123110968 123400175 123447848 110429785 8057169 100826492 5722797
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