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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103858981   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 bna-r.1   125583340   tyrosine--tRNA ligase, chloroplastic/mitochondrial-like 
 bna-r.1   106438948   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 bna-r.1   106387281   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.5   EMB2768   Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial 
 ghi-r.1   107933932   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 ghi-r.1   107928115   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 cit-r.1   102614209   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100813016   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 gma-u.5   100795726   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 vvi-u.5   100246653   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.5   18105304   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   25494107   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   25491022   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.5   101255211   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 sot-r.1   102604688   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 nta-r.1   107832553   tyrosine--tRNA ligase, chloroplastic/mitochondrial-like 
 nta-r.1   107805172   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 nta-r.1   107800102   tyrosine--tRNA ligase, chloroplastic/mitochondrial-like 
 zma-u.5   100273682   uncharacterized LOC100273682 
 tae-r.2   123181012   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 hvu-r.1   123430775   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 sbi-r.1   8057469   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 bdi-r.1   100835648   tyrosine--tRNA ligase, chloroplastic/mitochondrial 
 bdi-r.1   100832707   tyrosine--tRNA ligase, chloroplastic/mitochondrial-like 
 cre-r.1   CHLRE_13g606050v5   uncharacterized protein 

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Top 50 coexpressed genes to 103858981 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103858981 (bra-r.6 coexpression data)

CoexMap"103858981"


braLOC103858981 | Entrez gene ID : 103858981    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta zma tae hvu sbi bdi cre osa
Paralog 1 3 1 2 1 2 1 1 2 1 1 3 1 1 1 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp00970 [list] [network] Aminoacyl-tRNA biosynthesis (141 genes)
GO BP
GO:0006437 [list] [network] tyrosyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (171 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (887 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1543 genes)  IEA  
GO MF
GO:0004831 [list] [network] tyrosine-tRNA ligase activity  (4 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1857 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2916 genes)  IEA  
Protein XP_009134703.2 [sequence] [blastp]
XP_009134705.2 [sequence] [blastp]
XP_009134706.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 2  (predict for XP_009134703.2)
chlo 10  (predict for XP_009134705.2)
chlo 10  (predict for XP_009134706.2)
Subcellular
localization
TargetP
chlo 6  (predict for XP_009134703.2)
chlo 7,  mito 3  (predict for XP_009134705.2)
chlo 7,  mito 3  (predict for XP_009134706.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103858981
bna-r.1
for
125583340
bna-r.1
for
106438948
bna-r.1
for
106387281
ath-u.5
for
EMB2768
ghi-r.1
for
107933932
ghi-r.1
for
107928115
cit-r.1
for
102614209
gma-u.5
for
100813016
gma-u.5
for
100795726
vvi-u.5
for
100246653
ppo-u.5
for
18105304
mtr-u.5
for
25494107
mtr-u.5
for
25491022
sly-u.5
for
101255211
sot-r.1
for
102604688
nta-r.1
for
107832553
nta-r.1
for
107805172
nta-r.1
for
107800102
zma-u.5
for
100273682
tae-r.2
for
123181012
hvu-r.1
for
123430775
sbi-r.1
for
8057469
bdi-r.1
for
100835648
bdi-r.1
for
100832707
cre-r.1
for
CHLRE_13g606050v5


Ortholog ID: 8013
Species bra bna bna bna ath ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta nta zma tae hvu sbi bdi bdi cre
Symbol LOC103858981 LOC106438948 LOC106387281 LOC106366816 EMB2768 LOC107933932 LOC107928115 LOC102614209 LOC100813016 LOC100795726 LOC100246653 LOC18105304 LOC25494107 LOC25491022 LOC101255211 LOC102604688 LOC107832553 LOC107805172 LOC107800102 LOC100273682 LOC123181012 LOC123430775 LOC8057469 LOC100835648 LOC100832707 CHLRE_13g606050v5
Function* tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial-like Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial-like tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial-like uncharacterized LOC100273682 tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial tyrosine--tRNA ligase, chloroplastic/mitochondrial-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit00290 Valine, leucine and isoleucine biosynthesis 3
cit00770 Pantothenate and CoA biosynthesis 3
cit01210 2-Oxocarboxylic acid metabolism 3
cit00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo00860 Porphyrin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00230 Purine metabolism 2
sbi00010 Glycolysis / Gluconeogenesis 2
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 11
cre00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103858981 106438948 106387281 106366816 821282 107933932 107928115 102614209 100813016 100795726 100246653 18105304 25494107 25491022 101255211 102604688 107832553 107805172 107800102 100273682 123181012 123430775 8057469 100835648 100832707 5724689
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