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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103860925   decapping nuclease DXO homolog, chloroplastic 
 ath-u.5   AT4G17620   glycine-rich protein 
 gma-u.5   100798780   NAD-capped RNA hydrolase DXO1 
 gma-u.5   100778656   NAD-capped RNA hydrolase DXO1 
 vvi-u.5   100248998   NAD-capped RNA hydrolase DXO1 
 ppo-u.5   18096763   NAD-capped RNA hydrolase DXO1 
 mtr-u.5   11426961   NAD-capped RNA hydrolase DXO1 
 sly-u.5   101250912   NAD-capped RNA hydrolase DXO1 
 osa-u.5   9268788   NAD-capped RNA hydrolase DXO1 
 zma-u.5   103630321   decapping nuclease DXO homolog, chloroplastic 

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Top 50 coexpressed genes to 103860925 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103860925 (bra-r.6 coexpression data)

CoexMap"103860925"


braLOC103860925 | Entrez gene ID : 103860925    
Species bra ath gma vvi ppo mtr sly osa zma hvu bna cit ghi sbi bdi nta tae cre sot
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0110155 [list] [network] NAD-cap decapping  (2 genes)  IEA  
GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process  (90 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (1543 genes)  IEA  
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0034353 [list] [network] mRNA 5'-diphosphatase activity  (2 genes)  IEA  
Protein XP_009136858.1 [sequence] [blastp]
XP_033144030.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  extr 1,  vacu 1,  pero 1,  cyto_pero 1  (predict for XP_009136858.1)
chlo 3,  nucl 2,  plas 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_033144030.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_009136858.1)
chlo 9  (predict for XP_033144030.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103860925
ath-u.5
for
AT4G17620
gma-u.5
for
100798780
gma-u.5
for
100778656
vvi-u.5
for
100248998
ppo-u.5
for
18096763
mtr-u.5
for
11426961
sly-u.5
for
101250912
osa-u.5
for
9268788
zma-u.5
for
103630321


Ortholog ID: 8087
Species bra bra bna bna ath ghi ghi cit gma gma vvi ppo mtr sly sot sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC103860925 LOC103855575 LOC106440227 LOC106414678 AT4G17620 LOC107886405 LOC107919853 LOC102622361 LOC100798780 LOC100778656 LOC100248998 LOC18096763 LOC11426961 LOC101250912 LOC102594315 LOC102587755 LOC107818288 LOC107809742 LOC9268788 LOC103630321 LOC123131394 LOC123187516 LOC123442330 LOC8085088 LOC100833686 CHLRE_07g338400v5
Function* decapping nuclease DXO homolog, chloroplastic decapping nuclease DXO homolog, chloroplastic NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 glycine-rich protein NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 uncharacterized LOC102594315 decapping nuclease DXO homolog, chloroplastic NAD-capped RNA hydrolase DXO1-like NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1 decapping nuclease DXO homolog, chloroplastic NAD-capped RNA hydrolase DXO1 NAD-capped RNA hydrolase DXO1-like NAD-capped RNA hydrolase DXO1 decapping nuclease DXO homolog, chloroplastic decapping nuclease DXO homolog, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00020 Citrate cycle (TCA cycle) 2
ppo00190 Oxidative phosphorylation 2
ppo01200 Carbon metabolism 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00514 Other types of O-glycan biosynthesis 2
nta03022 Basal transcription factors 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103860925 103855575 106440227 106414678 827482 107886405 107919853 102622361 100798780 100778656 100248998 18096763 11426961 101250912 102594315 102587755 107818288 107809742 9268788 103630321 123131394 123187516 123442330 8085088 100833686 5725668
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