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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103861057   vacuolar protein sorting-associated protein 54, chloroplastic 
 bra-r.6   103857441   vacuolar protein sorting-associated protein 54, chloroplastic 
 bna-r.1   106446421   vacuolar protein sorting-associated protein 54, chloroplastic 
 bna-r.1   106437855   vacuolar protein sorting-associated protein 54, chloroplastic 
 bna-r.1   106419751   vacuolar protein sorting-associated protein 54, chloroplastic 
 ath-u.5   VPS54   VPS54 
 ghi-r.1   107930362   vacuolar protein sorting-associated protein 54, chloroplastic 
 ghi-r.1   107925085   vacuolar protein sorting-associated protein 54, chloroplastic 
 cit-r.1   102630295   vacuolar protein sorting-associated protein 54, chloroplastic 
 gma-u.5   100804432   vacuolar protein sorting-associated protein 54, chloroplastic 
 gma-u.5   100777704   vacuolar protein sorting-associated protein 54, chloroplastic 
 vvi-u.5   100264854   vacuolar protein sorting-associated protein 54, chloroplastic 
 ppo-u.5   7455043   vacuolar protein sorting-associated protein 54, chloroplastic 
 ppo-u.5   7491388   vacuolar protein sorting-associated protein 54, chloroplastic-like 
 mtr-u.5   25486692   vacuolar protein sorting-associated protein 54, chloroplastic 
 sly-u.5   101265887   vacuolar protein sorting-associated protein 54, chloroplastic-like 
 sly-u.5   101243942   vacuolar protein sorting-associated protein 54, chloroplastic-like 
 sot-r.1   102605373   vacuolar protein sorting-associated protein 54, chloroplastic-like 
 sot-r.1   102579328   vacuolar protein sorting-associated protein 54, chloroplastic-like 
 nta-r.1   107788286   vacuolar protein sorting-associated protein 54, chloroplastic 
 nta-r.1   107784108   vacuolar protein sorting-associated protein 54, chloroplastic 
 nta-r.1   107783146   vacuolar protein sorting-associated protein 54, chloroplastic 
 osa-u.5   9267478   vacuolar protein sorting-associated protein 54, chloroplastic 
 zma-u.5   103646811   vacuolar protein sorting-associated protein 54, chloroplastic 
 zma-u.5   100192923   vacuolar protein sorting-associated protein 54, chloroplastic 
 tae-r.2   123043443   vacuolar protein sorting-associated protein 54, chloroplastic 
 tae-r.2   123055579   vacuolar protein sorting-associated protein 54, chloroplastic 
 tae-r.2   123187266   vacuolar protein sorting-associated protein 54, chloroplastic 
 hvu-r.1   123424486   vacuolar protein sorting-associated protein 54, chloroplastic 
 sbi-r.1   8083422   vacuolar protein sorting-associated protein 54, chloroplastic 
 bdi-r.1   100843531   vacuolar protein sorting-associated protein 54, chloroplastic 
 cre-r.1   CHLRE_02g087551v5   uncharacterized protein 

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Top 50 coexpressed genes to 103861057 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103861057 (bra-r.6 coexpression data)

CoexMap"103861057"


braLOC103861057 | Entrez gene ID : 103861057    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 3 1 2 1 2 1 2 1 2 2 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006896 [list] [network] Golgi to vacuole transport  (11 genes)  IEA  
GO:0042147 [list] [network] retrograde transport, endosome to Golgi  (27 genes)  IEA  
GO CC
GO:0000938 [list] [network] GARP complex  (5 genes)  IEA  
GO MF
GO:0019905 [list] [network] syntaxin binding  (19 genes)  IEA  
Protein XP_033144897.1 [sequence] [blastp]
XP_033144898.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_033144897.1)
cyto 4,  nucl 3,  chlo 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_033144898.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_033144897.1)
chlo 9  (predict for XP_033144898.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103861057
bra-r.6
for
103857441
bna-r.1
for
106446421
bna-r.1
for
106437855
bna-r.1
for
106419751
ath-u.5
for
VPS54
ghi-r.1
for
107930362
ghi-r.1
for
107925085
cit-r.1
for
102630295
gma-u.5
for
100804432
gma-u.5
for
100777704
vvi-u.5
for
100264854
ppo-u.5
for
7455043
ppo-u.5
for
7491388
mtr-u.5
for
25486692
sly-u.5
for
101265887
sly-u.5
for
101243942
sot-r.1
for
102605373
sot-r.1
for
102579328
nta-r.1
for
107788286
nta-r.1
for
107784108
nta-r.1
for
107783146
osa-u.5
for
9267478
zma-u.5
for
103646811
zma-u.5
for
100192923
tae-r.2
for
123043443
tae-r.2
for
123055579
tae-r.2
for
123187266
hvu-r.1
for
123424486
sbi-r.1
for
8083422
bdi-r.1
for
100843531
cre-r.1
for
CHLRE_02g087551v5


Ortholog ID: 6044
Species bra bra bna bna bna ath ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC103861057 LOC103857441 LOC106446421 LOC106419751 LOC106377089 VPS54 LOC107930362 LOC107925085 LOC102630295 LOC100804432 LOC100777704 LOC100264854 LOC7455043 LOC7491388 LOC25486692 LOC101265887 LOC101243942 LOC102605373 LOC102579328 LOC107784108 LOC107783146 LOC107766050 LOC9267478 LOC103646811 LOC100192923 LOC123043443 LOC123055579 LOC123187266 LOC123424486 LOC8083422 LOC100843531 CHLRE_02g087551v5
Function* vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic VPS54 vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic-like vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic-like vacuolar protein sorting-associated protein 54, chloroplastic-like vacuolar protein sorting-associated protein 54, chloroplastic-like vacuolar protein sorting-associated protein 54, chloroplastic-like vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic-like vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic vacuolar protein sorting-associated protein 54, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 4
bra04144 Endocytosis 3
bra05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 5
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 5
ghi00190 Oxidative phosphorylation 3
ghi04145 Phagosome 3
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 4
ghi00190 Oxidative phosphorylation 3
ghi04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 3
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 6
ppo04142 Lysosome 3
ppo05100 Bacterial invasion of epithelial cells 3
ppo00564 Glycerophospholipid metabolism 2
ppo00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 4
ppo04144 Endocytosis 3
ppo05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
mtr04144 Endocytosis 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 3
osa04142 Lysosome 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 6
zma04144 Endocytosis 4
zma05100 Bacterial invasion of epithelial cells 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 5
tae04144 Endocytosis 5
tae05100 Bacterial invasion of epithelial cells 5
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 6
tae04144 Endocytosis 6
tae05100 Bacterial invasion of epithelial cells 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 6
tae04144 Endocytosis 6
tae05100 Bacterial invasion of epithelial cells 6
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu04142 Lysosome 2
hvu04144 Endocytosis 2
hvu05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04142 Lysosome 3
sbi04144 Endocytosis 3
sbi04141 Protein processing in endoplasmic reticulum 2
sbi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103861057 103857441 106446421 106419751 106377089 827690 107930362 107925085 102630295 100804432 100777704 100264854 7455043 7491388 25486692 101265887 101243942 102605373 102579328 107784108 107783146 107766050 9267478 103646811 100192923 123043443 123055579 123187266 123424486 8083422 100843531 66052293
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