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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PUB13   plant U-box 13 
 gma-u.5   100812160   U-box domain-containing protein 13 
 gma-u.5   100815575   U-box domain-containing protein 13 
 vvi-u.5   100258708   U-box domain-containing protein 13 
 ppo-u.5   7488126   U-box domain-containing protein 13 
 ppo-u.5   7485711   U-box domain-containing protein 13 
 mtr-u.5   25492506   U-box domain-containing protein 13 
 sly-u.5   101250310   U-box domain-containing protein 13 
 sly-u.5   101255460   U-box domain-containing protein 13 
 osa-u.5   4352575   protein spotted leaf 11 
 osa-u.5   4332412   protein spotted leaf 11 
 zma-u.5   100191442   uncharacterized LOC100191442 
 zma-u.5   100304296   uncharacterized LOC100304296 
 zma-u.5   100502260   uncharacterized LOC100502260 

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Top 50 coexpressed genes to PUB13 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PUB13 (ath-u.5 coexpression data)

CoexMap"103873307"


braLOC103873307 | Entrez gene ID : 103873307    
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 1 2 1 2 1 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp04075 [list] [network] Plant hormone signal transduction (750 genes)
GO BP
GO:0007166 [list] [network] cell surface receptor signaling pathway  (114 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (533 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (7940 genes)  IEA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (531 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009149975.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 5,  vacu 3,  golg_plas 3,  E.R._plas 3,  cyto_plas 3  (predict for XP_009149975.1)
Subcellular
localization
TargetP
other 7  (predict for XP_009149975.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
PUB13
gma-u.5
for
100812160
gma-u.5
for
100815575
vvi-u.5
for
100258708
ppo-u.5
for
7488126
ppo-u.5
for
7485711
mtr-u.5
for
25492506
sly-u.5
for
101250310
sly-u.5
for
101255460
osa-u.5
for
4352575
osa-u.5
for
4332412
zma-u.5
for
100191442
zma-u.5
for
100304296
zma-u.5
for
100502260


Ortholog ID: 4743
Species bra bna bna ath ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC103873693 LOC106347535 LOC106413135 PUB13 LOC107959104 LOC107950173 LOC102612007 LOC100812160 LOC100815575 LOC100258708 LOC7485711 LOC7488126 LOC25492506 LOC101250310 LOC101255460 LOC102593028 LOC102591903 LOC107777996 LOC107791084 LOC4352575 LOC4332412 LOC100304296 LOC100191442 LOC123102475 LOC123110691 LOC123449014 LOC123452630 LOC8068102 LOC110430805 LOC100840368 LOC100831702
Function* U-box domain-containing protein 13 U-box domain-containing protein 13-like U-box domain-containing protein 13 plant U-box 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13 U-box domain-containing protein 13-like U-box domain-containing protein 13-like U-box domain-containing protein 13-like U-box domain-containing protein 13 protein spotted leaf 11 protein spotted leaf 11 uncharacterized LOC100304296 uncharacterized LOC100191442 protein spotted leaf 11 protein spotted leaf 11 protein spotted leaf 11-like protein spotted leaf 11 protein spotted leaf 11 protein spotted leaf 11-like protein spotted leaf 11 protein spotted leaf 11
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04016 MAPK signaling pathway - plant 3
bra03015 mRNA surveillance pathway 2
bra04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 6
bna04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 6
bna04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 11
gma04626 Plant-pathogen interaction 3
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 8
gma04626 Plant-pathogen interaction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 4
vvi04626 Plant-pathogen interaction 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 4
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 3
mtr01212 Fatty acid metabolism 3
mtr00620 Pyruvate metabolism 2
mtr00640 Propanoate metabolism 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot01240 Biosynthesis of cofactors 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 9
sot04016 MAPK signaling pathway - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 4
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 3
hvu04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103873693 106347535 106413135 823804 107959104 107950173 102612007 100812160 100815575 100258708 7485711 7488126 25492506 101250310 101255460 102593028 102591903 107777996 107791084 4352575 4332412 100304296 100191442 123102475 123110691 123449014 123452630 8068102 110430805 100840368 100831702
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