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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103873620   endoribonuclease Dicer homolog 3 
 bra-r.6   103845687   dicer-like protein 4 
 bra-r.6   103855153   endoribonuclease Dicer homolog 2 
 bra-r.6   103844613   endoribonuclease Dicer homolog 1 
 bna-r.1   111211877   endoribonuclease Dicer homolog 2-like 
 bna-r.1   106450530   endoribonuclease Dicer homolog 2-like 
 bna-r.1   106439495   dicer-like protein 4 
 ath-u.5   DCL2   dicer-like 2 
 ath-u.5   DCL3   dicer-like 3 
 ath-u.5   DCL4   dicer-like 4 
 ghi-r.1   107922284   endoribonuclease Dicer homolog 2 
 ghi-r.1   107954417   endoribonuclease Dicer homolog 1 
 ghi-r.1   107961631   endoribonuclease Dicer homolog 3a 
 cit-r.1   102621372   dicer-like protein 4 
 cit-r.1   102629634   endoribonuclease Dicer homolog 1 
 cit-r.1   102617691   endoribonuclease Dicer homolog 2 
 gma-u.5   100816164   endoribonuclease Dicer homolog 2 
 gma-u.5   100814732   endoribonuclease Dicer homolog 3a 
 gma-u.5   100811631   endoribonuclease Dicer homolog 1 
 vvi-u.5   100264308   endoribonuclease Dicer homolog 1 
 vvi-u.5   100258190   endoribonuclease Dicer homolog 2 
 vvi-u.5   100254311   endoribonuclease Dicer homolog 3a 
 ppo-u.5   18096402   endoribonuclease Dicer homolog 1 
 ppo-u.5   7462112   endoribonuclease Dicer homolog 2 
 ppo-u.5   7463776   endoribonuclease Dicer homolog 3 
 mtr-u.5   25493973   dicer-like protein 4 
 mtr-u.5   11416791   endoribonuclease Dicer homolog 2 
 mtr-u.5   25483869   endoribonuclease Dicer homolog 2 
 sly-u.5   DCL3   endoribonuclease Dicer homolog 3a 
 sly-u.5   DCL1   endoribonuclease Dicer homolog 1 
 sly-u.5   DCL2b   endoribonuclease Dicer 2b 
 sot-r.1   102580326   endoribonuclease Dicer homolog 2-like 
 sot-r.1   102580979   endoribonuclease Dicer homolog 2-like 
 sot-r.1   102580639   endoribonuclease Dicer homolog 2-like 
 nta-r.1   107824932   endoribonuclease Dicer homolog 3a-like 
 nta-r.1   107804767   dicer-like protein 4 
 nta-r.1   107793743   endoribonuclease Dicer homolog 1 
 osa-u.5   107282071   endoribonuclease Dicer homolog 3a-like 
 osa-u.5   4346696   endoribonuclease Dicer homolog 2b-like 
 zma-u.5   100279204   dicer-like 104 
 zma-u.5   103643440   endoribonuclease Dicer homolog 3b 
 zma-u.5   100381550   uncharacterized LOC100381550 
 tae-r.2   123189746   endoribonuclease Dicer homolog 4 
 hvu-r.1   123452624   endoribonuclease Dicer homolog 2a 
 hvu-r.1   123449883   endoribonuclease Dicer homolog 1 
 hvu-r.1   123445161   endoribonuclease Dicer homolog 3a 
 sbi-r.1   8056147   endoribonuclease Dicer homolog 3a 
 sbi-r.1   8064553   endoribonuclease Dicer homolog 2a 
 sbi-r.1   8064552   endoribonuclease Dicer homolog 2a 
 bdi-r.1   100842689   endoribonuclease Dicer homolog 1 
 bdi-r.1   100839791   endoribonuclease Dicer homolog 4 
 cre-r.1   CHLRE_16g695200v5   uncharacterized protein 
 cre-r.1   CHLRE_02g141000v5   uncharacterized protein 
 cre-r.1   CHLRE_07g345900v5   uncharacterized protein 

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Top 50 coexpressed genes to 103873620 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103873620 (bra-r.6 coexpression data)

CoexMap"103873620"


braLOC103873620 | Entrez gene ID : 103873620    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 3 3 3 3 3 3 3 3 2 3 1 3 3 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030422 [list] [network] siRNA processing  (18 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (7940 genes)  IEA  
GO MF
GO:0004525 [list] [network] ribonuclease III activity  (13 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1857 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2916 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009150277.1 [sequence] [blastp]
XP_009150278.1 [sequence] [blastp]
XP_009150279.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  mito 1,  plas 1,  mito_plas 1  (predict for XP_009150277.1)
nucl 6,  cyto 2,  mito 1,  plas 1,  mito_plas 1  (predict for XP_009150278.1)
nucl 6,  cyto 2,  mito 1,  plas 1,  mito_plas 1  (predict for XP_009150279.1)
Subcellular
localization
TargetP
other 9  (predict for XP_009150277.1)
other 9  (predict for XP_009150278.1)
other 9  (predict for XP_009150279.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103873620
bra-r.6
for
103845687
bra-r.6
for
103855153
bra-r.6
for
103844613
bna-r.1
for
111211877
bna-r.1
for
106450530
bna-r.1
for
106439495
ath-u.5
for
DCL2
ath-u.5
for
DCL3
ath-u.5
for
DCL4
ghi-r.1
for
107922284
ghi-r.1
for
107954417
ghi-r.1
for
107961631
cit-r.1
for
102621372
cit-r.1
for
102629634
cit-r.1
for
102617691
gma-u.5
for
100816164
gma-u.5
for
100814732
gma-u.5
for
100811631
vvi-u.5
for
100264308
vvi-u.5
for
100258190
vvi-u.5
for
100254311
ppo-u.5
for
18096402
ppo-u.5
for
7462112
ppo-u.5
for
7463776
mtr-u.5
for
25493973
mtr-u.5
for
11416791
mtr-u.5
for
25483869
sly-u.5
for
DCL3
sly-u.5
for
DCL1
sly-u.5
for
DCL2b
sot-r.1
for
102580326
sot-r.1
for
102580979
sot-r.1
for
102580639
nta-r.1
for
107824932
nta-r.1
for
107804767
nta-r.1
for
107793743
osa-u.5
for
107282071
osa-u.5
for
4346696
zma-u.5
for
100279204
zma-u.5
for
103643440
zma-u.5
for
100381550
tae-r.2
for
123189746
hvu-r.1
for
123452624
hvu-r.1
for
123449883
hvu-r.1
for
123445161
sbi-r.1
for
8056147
sbi-r.1
for
8064553
sbi-r.1
for
8064552
bdi-r.1
for
100842689
bdi-r.1
for
100839791
cre-r.1
for
CHLRE_16g695200v5
cre-r.1
for
CHLRE_02g141000v5
cre-r.1
for
CHLRE_07g345900v5


Ortholog ID: 537
Species bra bra bra bna bna bna ath ath ath ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi cre cre cre
Symbol LOC103845687 LOC103855153 LOC103844613 LOC106450530 LOC106439495 LOC106355731 DCL2 DCL4 DCL1 LOC107961631 LOC107943956 LOC107890465 LOC102629634 LOC102617691 LOC102624402 LOC100816164 LOC100796706 LOC100818702 LOC100264308 LOC100258190 LOC100254311 LOC18096402 LOC7462112 LOC7463776 LOC11431448 LOC11436582 LOC25501509 DCL3 DCL1 DCL2b LOC102580326 LOC102597432 LOC102601788 LOC107824932 LOC107802922 LOC107829523 LOC4348944 LOC4333337 LOC4324864 LOC103643440 LOC100381550 LOC103626078 LOC123093773 LOC123119635 LOC123080209 LOC123449883 LOC123431733 LOC8064553 LOC8064552 LOC8067129 LOC100839791 LOC100824131 LOC100836134 CHLRE_16g695200v5 CHLRE_02g141000v5 CHLRE_07g345900v5
Function* dicer-like protein 4 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 2-like dicer-like protein 4 endoribonuclease Dicer homolog 3 dicer-like 2 dicer-like 4 dicer-like 1 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 2 dicer-like protein 4 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 2 dicer-like protein 4 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3 endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 endoribonuclease Dicer 2b endoribonuclease Dicer homolog 2-like endoribonuclease Dicer homolog 1 dicer-like protein 4 endoribonuclease Dicer homolog 3a-like endoribonuclease Dicer homolog 2 endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 3b endoribonuclease Dicer homolog 2a-like endoribonuclease Dicer homolog 3a-like endoribonuclease Dicer homolog 3b uncharacterized LOC100381550 endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 3a endoribonuclease Dicer homolog 1 endoribonuclease Dicer homolog 3b-like endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 3b endoribonuclease Dicer homolog 4 endoribonuclease Dicer homolog 2a endoribonuclease Dicer homolog 3a uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra04136 Autophagy - other 2
bra04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03440 Homologous recombination 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 3
ghi04518 Integrin signaling 3
ghi04142 Lysosome 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi04518 Integrin signaling 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 9
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 3
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00310 Lysine degradation 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo03082 ATP-dependent chromatin remodeling 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa04141 Protein processing in endoplasmic reticulum 3
osa00510 N-Glycan biosynthesis 2
osa00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03040 Spliceosome 6
tae00310 Lysine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 3
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 2
bdi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04146 Peroxisome 7
cre00071 Fatty acid degradation 6
cre01212 Fatty acid metabolism 6
cre01200 Carbon metabolism 5
cre00592 alpha-Linolenic acid metabolism 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103845687 103855153 103844613 106450530 106439495 106355731 821300 832154 839574 107961631 107943956 107890465 102629634 102617691 102624402 100816164 100796706 100818702 100264308 100258190 100254311 18096402 7462112 7463776 11431448 11436582 25501509 101265460 101260085 101256737 102580326 102597432 102601788 107824932 107802922 107829523 4348944 4333337 4324864 103643440 100381550 103626078 123093773 123119635 123080209 123449883 123431733 8064553 8064552 8067129 100839791 100824131 100836134 66056850 5720424 5718140
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