ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	104649147	uncharacterized LOC104649147
sly-r.6	104649147	uncharacterized LOC104649147
sly-u.5	101268046	uncharacterized LOC101268046
ath-u.5	AT3G08840	D-alanine-D-alanine ligase family
gma-u.5	100819595	uncharacterized LOC100819595
gma-u.5	100775955	uncharacterized LOC100775955
vvi-u.5	100265424	uncharacterized LOC100265424
ppo-u.5	7468075	uncharacterized LOC7468075
mtr-u.5	11407566	uncharacterized LOC11407566
osa-u.5	4344370	uncharacterized LOC4344370
zma-u.5	100383342	D-alanine--D-alanine ligase family

functional annotation

KEGG

GO BP

GO:0009252 [list] [network] peptidoglycan biosynthetic process

(4 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast

(632 genes)

IEA

GO MF

GO:0008716 [list] [network] D-alanine-D-alanine ligase activity

(3 genes)

IEA

Protein

XP_010326176.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, nucl 1, plas 1, nucl_plas 1

(predict for XP_010326176.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_010326176.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 104649147 .	sly-r.6 for 104649147 .	sly-u.5 for 101268046 .	ath-u.5 for AT3G08840 .	gma-u.5 for 100819595 .	gma-u.5 for 100775955 .	vvi-u.5 for 100265424 .	ppo-u.5 for 7468075 .	mtr-u.5 for 11407566 .	osa-u.5 for 4344370 .	zma-u.5 for 100383342 .

Ortholog ID: 7200

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

Function^*

D-alanine-D-alanine ligase family

uncharacterized LOC100775955

uncharacterized LOC100819595

uncharacterized LOC101268046

uncharacterized LOC4344370

D-alanine--D-alanine ligase family

uncharacterized LOC103830077

uncharacterized LOC103859329

uncharacterized LOC100265424

uncharacterized LOC7468075

uncharacterized LOC11407566

uncharacterized LOC123051441

uncharacterized LOC123187386

uncharacterized LOC123425193

D-alanine--D-alanine ligase

uncharacterized LOC107899599

uncharacterized LOC106353000

uncharacterized LOC106430373

uncharacterized protein

uncharacterized LOC8086409

uncharacterized LOC8077518

uncharacterized LOC102602208

uncharacterized LOC102620172

uncharacterized LOC100840063

uncharacterized LOC107762573

uncharacterized LOC107782046

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	4
gma00220	Arginine biosynthesis	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00220	Arginine biosynthesis	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00910	Nitrogen metabolism	2
gma00260	Glycine, serine and threonine metabolism	2
gma00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	5
osa00630	Glyoxylate and dicarboxylate metabolism	4
osa00260	Glycine, serine and threonine metabolism	2
osa00270	Cysteine and methionine metabolism	2
osa00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	3
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00410	beta-Alanine metabolism	3
mtr03020	RNA polymerase	2
mtr00240	Pyrimidine metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00620	Pyruvate metabolism	4
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3
tae00604	Glycosphingolipid biosynthesis - ganglio series	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	5
bna04082	Neuroactive ligand signaling	4
bna00460	Cyanoamino acid metabolism	2
bna00500	Starch and sucrose metabolism	2
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi00100	Steroid biosynthesis	2
bdi00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00904	Diterpenoid biosynthesis	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00904	Diterpenoid biosynthesis	2
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

820031

100775955

100819595

101268046

4344370

100383342

103830077

103859329

100265424

7468075

11407566

123051441

123187386

123425193

107948973

107899599

106353000

106430373

5726155

8086409

8077518

102602208

102620172

100840063

107762573

107782046

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 104649147 (sly-u.5 coexpression data)

Top 50 enrichment test to 104649147 (sly-u.5 coexpression data)


Species	sly	ath	gma	vvi	ppo	mtr	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	3	1	2	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 104649147 (sly-u.5 coexpression data)

Top 50 enrichment test to 104649147 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**