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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106348480   protein TRANSPARENT TESTA GLABRA 1-like 
 bna-r.1   106412552   WD repeat-containing protein LWD1 
 bna-r.1   106401856   WD repeat-containing protein LWD1 
 bna-r.1   106348252   protein TRANSPARENT TESTA GLABRA 1 
 bra-r.6   103843095   WD repeat-containing protein LWD1 
 bra-r.6   103874320   protein TRANSPARENT TESTA GLABRA 1 
 ath-u.5   LWD2   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   TTG1   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   ATAN11   Transducin/WD40 repeat-like superfamily protein 
 ghi-r.1   107896977   WD repeat-containing protein LWD1-like 
 ghi-r.1   107904228   protein TRANSPARENT TESTA GLABRA 1 
 ghi-r.1   107909399   protein TRANSPARENT TESTA GLABRA 1 
 cit-r.1   102607596   protein TRANSPARENT TESTA GLABRA 1 
 cit-r.1   102615088   WD repeat-containing protein LWD1 
 gma-u.5   100818850   WD repeat-containing protein LWD1 
 gma-u.5   100804923   protein TRANSPARENT TESTA GLABRA 1 
 gma-u.5   100782785   protein TRANSPARENT TESTA GLABRA 1 
 vvi-u.5   WDR1   WD-repeat 1 
 vvi-u.5   WDR2   WD repeat 2 
 ppo-u.5   7493468   protein TRANSPARENT TESTA GLABRA 1 
 ppo-u.5   7464471   protein TRANSPARENT TESTA GLABRA 1 
 ppo-u.5   7466288   WD repeat-containing protein LWD1 
 mtr-u.5   11440452   protein TRANSPARENT TESTA GLABRA 1 
 mtr-u.5   11437531   WD repeat-containing protein LWD1 
 sly-u.5   101260134   WD repeat-containing protein LWD1 
 sly-u.5   101251160   protein TRANSPARENT TESTA GLABRA 1 
 sly-u.5   101262902   protein TRANSPARENT TESTA GLABRA 1 
 sot-r.1   102589991   protein TRANSPARENT TESTA GLABRA 1-like 
 sot-r.1   102593569   protein TRANSPARENT TESTA GLABRA 1-like 
 nta-r.1   107800718   protein TRANSPARENT TESTA GLABRA 1-like 
 nta-r.1   107803204   protein TRANSPARENT TESTA GLABRA 1-like 
 nta-r.1   107824070   WD repeat-containing protein LWD1 
 osa-u.5   4329512   WD repeat-containing protein LWD1 
 osa-u.5   4330331   protein TRANSPARENT TESTA GLABRA 1 
 zma-u.5   103627556   protein TRANSPARENT TESTA GLABRA 1 
 zma-u.5   100383192   WD40 repeat protein 
 tae-r.2   123145107   protein TRANSPARENT TESTA GLABRA 1 
 tae-r.2   123127421   WD repeat-containing protein LWD1 
 tae-r.2   123128013   protein TRANSPARENT TESTA GLABRA 1 
 hvu-r.1   123402235   protein TRANSPARENT TESTA GLABRA 1 
 hvu-r.1   123401825   WD repeat-containing protein LWD1-like 
 sbi-r.1   8059609   WD repeat-containing protein LWD1 
 sbi-r.1   8076027   protein TRANSPARENT TESTA GLABRA 1 
 sbi-r.1   110434868   WD repeat-containing protein LWD1-like 
 bdi-r.1   100838616   WD repeat-containing protein LWD1 
 bdi-r.1   100823168   protein TRANSPARENT TESTA GLABRA 1 
 cre-r.1   CHLRE_16g674000v5   uncharacterized protein 

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Top 50 coexpressed genes to 106348480 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106348480 (bna-r.1 coexpression data)

CoexMap"106348480"


bnaLOC106348480 | Entrez gene ID : 106348480    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 2 3 2 3 2 3 2 3 2 2 3 2 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03083 [list] [network] Polycomb repressive complex (189 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein NP_001303079.1 [sequence] [blastp]
XP_013643681.2 [sequence] [blastp]
XP_013643682.2 [sequence] [blastp]
XP_048617797.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  nucl_plas 3  (predict for NP_001303079.1)
nucl 4,  cyto 3,  nucl_plas 3  (predict for XP_013643681.2)
nucl 4,  cyto 3,  nucl_plas 3  (predict for XP_013643682.2)
nucl 4,  cyto 3,  nucl_plas 3  (predict for XP_048617797.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001303079.1)
other 8  (predict for XP_013643681.2)
other 8  (predict for XP_013643682.2)
other 8  (predict for XP_048617797.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106348480
bna-r.1
for
106412552
bna-r.1
for
106401856
bna-r.1
for
106348252
bra-r.6
for
103843095
bra-r.6
for
103874320
ath-u.5
for
LWD2
ath-u.5
for
TTG1
ath-u.5
for
ATAN11
ghi-r.1
for
107896977
ghi-r.1
for
107904228
ghi-r.1
for
107909399
cit-r.1
for
102607596
cit-r.1
for
102615088
gma-u.5
for
100818850
gma-u.5
for
100804923
gma-u.5
for
100782785
vvi-u.5
for
WDR1
vvi-u.5
for
WDR2
ppo-u.5
for
7493468
ppo-u.5
for
7464471
ppo-u.5
for
7466288
mtr-u.5
for
11440452
mtr-u.5
for
11437531
sly-u.5
for
101260134
sly-u.5
for
101251160
sly-u.5
for
101262902
sot-r.1
for
102589991
sot-r.1
for
102593569
nta-r.1
for
107800718
nta-r.1
for
107803204
nta-r.1
for
107824070
osa-u.5
for
4329512
osa-u.5
for
4330331
zma-u.5
for
103627556
zma-u.5
for
100383192
tae-r.2
for
123145107
tae-r.2
for
123127421
tae-r.2
for
123128013
hvu-r.1
for
123402235
hvu-r.1
for
123401825
sbi-r.1
for
8059609
sbi-r.1
for
8076027
sbi-r.1
for
110434868
bdi-r.1
for
100838616
bdi-r.1
for
100823168
cre-r.1
for
CHLRE_16g674000v5


Ortholog ID: 2559
Species bna bna bna bra bra ath ath ath ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi cre
Symbol LOC106348480 LOC106412552 LOC106401856 LOC103843095 LOC103874320 LWD2 TTG1 ATAN11 LOC107909399 LOC107914802 LOC107938089 LOC102607596 LOC102615088 LOC100818850 LOC100804923 LOC100779365 WDR1 WDR2 LOC7464471 LOC7466288 LOC112326476 LOC11440452 LOC11437531 LOC101260134 LOC101251160 LOC101262902 LOC102589991 LOC102593569 LOC107800718 LOC107803204 LOC107824070 LOC4329512 LOC4330331 LOC103627556 LOC100383192 LOC123145107 LOC123127421 LOC123137081 LOC123402235 LOC123401825 LOC8059609 LOC8076027 LOC110434868 LOC100838616 LOC100823168 CHLRE_16g674000v5
Function* protein TRANSPARENT TESTA GLABRA 1-like WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1-like protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD-repeat 1 WD repeat 2 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1-like protein TRANSPARENT TESTA GLABRA 1-like protein TRANSPARENT TESTA GLABRA 1-like protein TRANSPARENT TESTA GLABRA 1-like WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 protein TRANSPARENT TESTA GLABRA 1 WD40 repeat protein protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1 WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1-like WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 WD repeat-containing protein LWD1-like WD repeat-containing protein LWD1 protein TRANSPARENT TESTA GLABRA 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 4
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 5
ghi00600 Sphingolipid metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03083 Polycomb repressive complex 3
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 5
ghi00600 Sphingolipid metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00513 Various types of N-glycan biosynthesis 3
gma03060 Protein export 2
gma03083 Polycomb repressive complex 2
gma00510 N-Glycan biosynthesis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 3
vvi03010 Ribosome 2
vvi00260 Glycine, serine and threonine metabolism 2
vvi00270 Cysteine and methionine metabolism 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 3
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
mtr01230 Biosynthesis of amino acids 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03083 Polycomb repressive complex 2
sly03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
sot03083 Polycomb repressive complex 2
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
sot03083 Polycomb repressive complex 2
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 6
nta03083 Polycomb repressive complex 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 3
nta03083 Polycomb repressive complex 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04145 Phagosome 3
tae04517 IgSF CAM signaling 3
tae04814 Motor proteins 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04145 Phagosome 3
tae04517 IgSF CAM signaling 3
tae04814 Motor proteins 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00053 Ascorbate and aldarate metabolism 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00053 Ascorbate and aldarate metabolism 2
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03040 Spliceosome 3
bdi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106348480 106412552 106401856 103843095 103874320 822276 832523 837849 107909399 107914802 107938089 102607596 102615088 100818850 100804923 100779365 100248734 100241251 7464471 7466288 112326476 11440452 11437531 101260134 101251160 101262902 102589991 102593569 107800718 107803204 107824070 4329512 4330331 103627556 100383192 123145107 123127421 123137081 123402235 123401825 8059609 8076027 110434868 100838616 100823168 5721434
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