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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   111207252   increased DNA methylation 3-like 
 bna-r.1   106424910   increased DNA methylation 3 
 bna-r.1   106421571   increased DNA methylation 3 
 bra-r.6   103830611   increased DNA methylation 3 
 bra-r.6   103832106   increased DNA methylation 3 
 ath-u.5   AT1G20870   HSP20-like chaperones superfamily protein 
 ath-u.5   AT1G76440   HSP20-like chaperones superfamily protein 
 ghi-r.1   107918229   increased DNA methylation 3 
 ghi-r.1   107920894   increased DNA methylation 3 
 cit-r.1   102607717   increased DNA methylation 3 
 cit-r.1   127902479   increased DNA methylation 3 
 gma-u.5   100786407   increased DNA methylation 3 
 gma-u.5   100804780   alpha-crystallin domain-containing protein 
 vvi-u.5   100246177   increased DNA methylation 3 
 ppo-u.5   7485692   increased DNA methylation 3 
 mtr-u.5   11407285   increased DNA methylation 3 
 mtr-u.5   11429222   increased DNA methylation 3 
 sly-u.5   101267233   increased DNA methylation 3-like 
 sly-u.5   101266717   increased DNA methylation 3 
 sot-r.1   102582147   increased DNA methylation 3-like 
 sot-r.1   102581493   increased DNA methylation 3 
 nta-r.1   107786348   increased DNA methylation 3 

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Top 50 coexpressed genes to 111207252 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 111207252 (bna-r.1 coexpression data)

CoexMap"106351580"


bnaLOC106351580 | Entrez gene ID : 106351580    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa bdi tae zma sbi hvu cre
Paralog 3 2 2 2 2 2 1 1 2 2 2 1 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_013646816.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_013646816.2)
Subcellular
localization
TargetP
other 8  (predict for XP_013646816.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
111207252
bna-r.1
for
106424910
bna-r.1
for
106421571
bra-r.6
for
103830611
bra-r.6
for
103832106
ath-u.5
for
AT1G20870
ath-u.5
for
AT1G76440
ghi-r.1
for
107918229
ghi-r.1
for
107920894
cit-r.1
for
102607717
cit-r.1
for
127902479
gma-u.5
for
100786407
gma-u.5
for
100804780
vvi-u.5
for
100246177
ppo-u.5
for
7485692
mtr-u.5
for
11407285
mtr-u.5
for
11429222
sly-u.5
for
101267233
sly-u.5
for
101266717
sot-r.1
for
102582147
sot-r.1
for
102581493
nta-r.1
for
107786348


Ortholog ID: 7419
Species bna bna bra bra ath ath ghi ghi cit cit gma gma vvi ppo mtr mtr sly sly sot sot nta
Symbol LOC106424910 LOC106421571 LOC103830611 LOC103832106 AT1G20870 AT1G76440 LOC107918229 LOC107920894 LOC102607717 LOC127902479 LOC100786407 LOC100804780 LOC100246177 LOC7485692 LOC11407285 LOC11429222 LOC101267233 LOC101266717 LOC102582147 LOC102581493 LOC107786348
Function* increased DNA methylation 3 increased DNA methylation 3 increased DNA methylation 3 increased DNA methylation 3 HSP20-like chaperones superfamily protein HSP20-like chaperones superfamily protein increased DNA methylation 3 increased DNA methylation 3 increased DNA methylation 3 increased DNA methylation 3 increased DNA methylation 3 alpha-crystallin domain-containing protein increased DNA methylation 3 increased DNA methylation 3 increased DNA methylation 3 increased DNA methylation 3 increased DNA methylation 3-like increased DNA methylation 3 increased DNA methylation 3-like increased DNA methylation 3 increased DNA methylation 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 3
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 3
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 3
bra03010 Ribosome 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03082 ATP-dependent chromatin remodeling 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 3
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04075 Plant hormone signal transduction 2
ppo03083 Polycomb repressive complex 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 4
sly00630 Glyoxylate and dicarboxylate metabolism 3
sly00710 Carbon fixation by Calvin cycle 3
sly00260 Glycine, serine and threonine metabolism 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106424910 106421571 103830611 103832106 838680 843977 107918229 107920894 102607717 127902479 100786407 100804780 100246177 7485692 11407285 11429222 101267233 101266717 102582147 102581493 107786348
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