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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106353904   cyclin-dependent kinase D-2 
 bna-r.1   125591267   cyclin-dependent kinase D-3 
 bna-r.1   106405783   cyclin-dependent kinase D-2 
 bra-r.6   103831844   cyclin-dependent kinase D-1 
 bra-r.6   103835926   cyclin-dependent kinase D-3 
 bra-r.6   103831127   cyclin-dependent kinase D-2 
 ath-u.5   CDKD1;3   cyclin-dependent kinase D1;3 
 ath-u.5   CAK4   CDK-activating kinase 4 
 ath-u.5   CDKD1;1   cyclin-dependent kinase D1;1 
 ghi-r.1   107945839   cyclin-dependent kinase D-3 
 ghi-r.1   107899055   cyclin-dependent kinase D-3 
 ghi-r.1   107890841   cyclin-dependent kinase D-3 
 cit-r.1   102629347   cyclin-dependent kinase D-3 
 gma-u.5   100786357   cyclin-dependent kinase D-3 
 gma-u.5   100776618   cyclin-dependent kinase D-3-like 
 gma-u.5   100814263   cyclin-dependent kinase D-3 
 vvi-u.5   100247566   cyclin-dependent kinase D-3 
 vvi-u.5   100244503   cyclin-dependent kinase D-1 
 ppo-u.5   7496941   cyclin-dependent kinase D-2 
 ppo-u.5   112323674   cyclin-dependent kinase D-3 
 mtr-u.5   25496775   cyclin-dependent kinase D-3 
 mtr-u.5   25489030   cyclin-dependent kinase D-3 
 sly-u.5   101253215   cyclin-dependent kinase D-3 
 sot-r.1   102591981   cyclin-dependent kinase D-3-like 
 nta-r.1   107761317   cyclin-dependent kinase D-3-like 
 nta-r.1   107810174   cyclin-dependent kinase D-3 
 osa-u.5   4338689   cyclin-dependent kinase D-1-like 
 zma-u.5   100272776   uncharacterized LOC100272776 
 zma-u.5   100273893   Putative cyclin-dependent kinase family protein 
 tae-r.2   123181894   cyclin-dependent kinase D-1 
 tae-r.2   123054497   cyclin-dependent kinase D-1 
 tae-r.2   123131446   cyclin-dependent kinase D-1 
 hvu-r.1   123442302   cyclin-dependent kinase D-1 
 sbi-r.1   8076855   cyclin-dependent kinase D-1 
 bdi-r.1   100833383   cyclin-dependent kinase D-1 
 cre-r.1   CHLRE_09g388000v5   uncharacterized protein 

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Top 50 coexpressed genes to 106353904 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106353904 (bna-r.1 coexpression data)

CoexMap"106353904"


bnaLOC106353904 | Entrez gene ID : 106353904    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 3 3 3 1 3 2 2 2 1 1 2 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (509 genes)  IEA  
GO:0006468 [list] [network] protein phosphorylation  (3287 genes)  IEA  
GO CC
GO:0070985 [list] [network] transcription factor TFIIK complex  (15 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (38 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0008353 [list] [network] RNA polymerase II CTD heptapeptide repeat kinase activity  (79 genes)  IEA  
GO:0004693 [list] [network] cyclin-dependent protein serine/threonine kinase activity  (102 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
Protein XP_048616738.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1  (predict for XP_048616738.1)
Subcellular
localization
TargetP
other 6,  mito 5  (predict for XP_048616738.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106353904
bna-r.1
for
125591267
bna-r.1
for
106405783
bra-r.6
for
103831844
bra-r.6
for
103835926
bra-r.6
for
103831127
ath-u.5
for
CDKD1;3
ath-u.5
for
CAK4
ath-u.5
for
CDKD1;1
ghi-r.1
for
107945839
ghi-r.1
for
107899055
ghi-r.1
for
107890841
cit-r.1
for
102629347
gma-u.5
for
100786357
gma-u.5
for
100776618
gma-u.5
for
100814263
vvi-u.5
for
100247566
vvi-u.5
for
100244503
ppo-u.5
for
7496941
ppo-u.5
for
112323674
mtr-u.5
for
25496775
mtr-u.5
for
25489030
sly-u.5
for
101253215
sot-r.1
for
102591981
nta-r.1
for
107761317
nta-r.1
for
107810174
osa-u.5
for
4338689
zma-u.5
for
100272776
zma-u.5
for
100273893
tae-r.2
for
123181894
tae-r.2
for
123054497
tae-r.2
for
123131446
hvu-r.1
for
123442302
sbi-r.1
for
8076855
bdi-r.1
for
100833383
cre-r.1
for
CHLRE_09g388000v5


Ortholog ID: 4463
Species bna bna bna bra bra bra ath ath ath ghi ghi ghi cit gma gma gma vvi vvi ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC106405783 LOC106369042 LOC106362018 LOC103831844 LOC103835926 LOC103831127 CDKD1;3 CAK4 CDKD1;1 LOC107945839 LOC107890841 LOC107888795 LOC102629347 LOC100786357 LOC100776618 LOC100813673 LOC100247566 LOC100244503 LOC7496941 LOC112323674 LOC25496775 LOC25489030 LOC101253215 LOC102591981 LOC107761317 LOC107810174 LOC4338689 LOC100272776 LOC100273893 LOC123181894 LOC123054497 LOC123131446 LOC123442302 LOC8076855 LOC100833383 CHLRE_09g388000v5
Function* cyclin-dependent kinase D-2 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3 cyclin-dependent kinase D-1 cyclin-dependent kinase D-3 cyclin-dependent kinase D-2 cyclin-dependent kinase D1;3 CDK-activating kinase 4 cyclin-dependent kinase D1;1 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3-like cyclin-dependent kinase D-3 cyclin-dependent kinase D-3 cyclin-dependent kinase D-1 cyclin-dependent kinase D-2 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3 cyclin-dependent kinase D-3-like cyclin-dependent kinase D-3-like cyclin-dependent kinase D-3 cyclin-dependent kinase D-1-like uncharacterized LOC100272776 Putative cyclin-dependent kinase family protein cyclin-dependent kinase D-1 cyclin-dependent kinase D-1 cyclin-dependent kinase D-1 cyclin-dependent kinase D-1 cyclin-dependent kinase D-1 cyclin-dependent kinase D-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 8
bna03060 Protein export 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra00510 N-Glycan biosynthesis 2
bra03420 Nucleotide excision repair 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 2
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
ghi04144 Endocytosis 3
ghi04517 IgSF CAM signaling 3
ghi05100 Bacterial invasion of epithelial cells 3
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
ghi00061 Fatty acid biosynthesis 2
ghi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
nta00450 Selenocompound metabolism 4
nta00564 Glycerophospholipid metabolism 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 5
nta00450 Selenocompound metabolism 4
nta00564 Glycerophospholipid metabolism 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
zma04141 Protein processing in endoplasmic reticulum 4
zma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03022 Basal transcription factors 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi03022 Basal transcription factors 2
sbi03420 Nucleotide excision repair 2
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03430 Mismatch repair 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03022 Basal transcription factors 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106405783 106369042 106362018 103831844 103835926 103831127 838384 842993 843704 107945839 107890841 107888795 102629347 100786357 100776618 100813673 100247566 100244503 7496941 112323674 25496775 25489030 101253215 102591981 107761317 107810174 4338689 100272776 100273893 123181894 123054497 123131446 123442302 8076855 100833383 5720019
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