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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106358409   transcription initiation factor TFIID subunit 4b 
 ath-u.5   TAF4   TBP-associated factor 4 
 gma-u.5   100798514   transcription initiation factor TFIID subunit 4b 
 gma-u.5   100797127   transcription initiation factor TFIID subunit 4b 
 gma-u.5   100795389   transcription initiation factor TFIID subunit 4b 
 vvi-u.5   100252311   transcription initiation factor TFIID subunit 4b 
 ppo-u.5   7462851   transcription initiation factor TFIID subunit 4b 
 ppo-u.5   7497338   transcription initiation factor TFIID subunit 4b 
 mtr-u.5   25489943   transcription initiation factor TFIID subunit 4b 
 sly-u.5   101262209   transcription initiation factor TFIID subunit 4b 
 osa-u.5   4333214   transcription initiation factor TFIID subunit 4b 
 zma-u.5   100278950   transcription initiation factor TFIID subunit 4b 

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Top 50 coexpressed genes to 106358409 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106358409 (bna-r.1 coexpression data)

CoexMap"106358409"


bnaLOC106358409 | Entrez gene ID : 106358409    
Species bna ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bdi sbi cre
Paralog 1 1 3 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO CC
GO:0005669 [list] [network] transcription factor TFIID complex  (56 genes)  IEA  
GO MF
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (57 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (268 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_013653656.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1  (predict for XP_013653656.2)
Subcellular
localization
TargetP
mito 6,  other 3  (predict for XP_013653656.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106358409

.
ath-u.5
for
TAF4

.
gma-u.5
for
100798514

.
gma-u.5
for
100797127

.
gma-u.5
for
100795389

.
vvi-u.5
for
100252311

.
ppo-u.5
for
7462851

.
ppo-u.5
for
7497338

.
mtr-u.5
for
25489943

.
sly-u.5
for
101262209

.
osa-u.5
for
4333214

.
zma-u.5
for
100278950

.


Ortholog ID: 5386
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol TAF4 LOC100798514 LOC100797127 LOC101262209 LOC4333214 LOC100278950 LOC103827992 LOC103848801 LOC100252311 LOC7497338 LOC7462851 LOC25489943 LOC123097368 LOC123086110 LOC123448440 LOC107941920 LOC107892395 LOC106371586 LOC106358409 LOC8063215 LOC102579610 LOC102603242 LOC102619964 LOC100829985 LOC107766026 LOC107765591
Function* TBP-associated factor 4 transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b transcription initiation factor TFIID subunit 4b-like transcription initiation factor TFIID subunit 4b
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 3
tae03013 Nucleocytoplasmic transport 3
tae03250 Viral life cycle - HIV-1 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta04712 Circadian rhythm - plant 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta04712 Circadian rhythm - plant 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834330 100798514 100797127 101262209 4333214 100278950 103827992 103848801 100252311 7497338 7462851 25489943 123097368 123086110 123448440 107941920 107892395 106371586 106358409 8063215 102579610 102603242 102619964 100829985 107766026 107765591
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