ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106358527	NADP-dependent malic enzyme 2
bna-r.1	106433358	NADP-dependent malic enzyme 4, chloroplastic-like
bna-r.1	106429922	NADP-dependent malic enzyme 2
bna-r.1	106383609	NADP-dependent malic enzyme 2
bra-r.6	103850789	NADP-dependent malic enzyme 2
bra-r.6	103855920	NADP-dependent malic enzyme 2
ath-u.5	NADP-ME1	NADP-malic enzyme 1
ath-u.5	NADP-ME2	NADP-malic enzyme 2
ghi-r.1	107906971	NADP-dependent malic enzyme
ghi-r.1	107897353	NADP-dependent malic enzyme
ghi-r.1	107897092	NADP-dependent malic enzyme
cit-r.1	102626397	NADP-dependent malic enzyme
cit-r.1	102577988	NADP-dependent malic enzyme
cit-r.1	102622357	NADP-dependent malic enzyme
gma-u.5	100818219	NADP-dependent malic enzyme
gma-u.5	100804607	NADP-dependent malic enzyme
gma-u.5	100785718	NADP-dependent malic enzyme
vvi-u.5	100249166	NADP-dependent malic enzyme
vvi-u.5	NADP-ME	malate dehydrogenase (NADP+)
vvi-u.5	VVME2	malic enzyme
ppo-u.5	7461559	NADP-dependent malic enzyme-like
ppo-u.5	7476690	NADP-dependent malic enzyme
mtr-u.5	25490143	NADP-dependent malic enzyme
mtr-u.5	11434761	NADP-dependent malic enzyme
mtr-u.5	11419897	NADP-dependent malic enzyme 4, chloroplastic
sly-u.5	ME1	NADP-malic enzyme
sly-u.5	ME2	cytosolic NADP-malic enzyme
sly-u.5	101249193	NADP-dependent malic enzyme
sot-r.1	102589524	NADP-dependent malic enzyme-like
sot-r.1	102578500	NADP-dependent malic enzyme, chloroplastic
sot-r.1	102580952	NADP-dependent malic enzyme
nta-r.1	107820287	NADP-dependent malic enzyme
nta-r.1	107765028	NADP-dependent malic enzyme
nta-r.1	107772805	NADP-dependent malic enzyme, chloroplastic
osa-u.5	4338007	NADP-dependent malic enzyme, chloroplastic-like
osa-u.5	4324717	NADP-dependent malic enzyme
zma-u.5	542233	NADP malic enzyme 3
zma-u.5	542331	NADP-dependent malic enzyme
zma-u.5	542209	NADP malic enzyme 4
tae-r.2	123180732	NADP-dependent malic enzyme, chloroplastic
tae-r.2	123115296	NADP-dependent malic enzyme, chloroplastic
tae-r.2	123079048	NADP-dependent malic enzyme
hvu-r.1	123442914	NADP-dependent malic enzyme, chloroplastic
hvu-r.1	123444313	NADP-dependent malic enzyme
hvu-r.1	123444382	NADP-dependent malic enzyme-like
sbi-r.1	8084718	NADP-dependent malic enzyme, chloroplastic
sbi-r.1	110433907	NADP-dependent malic enzyme
sbi-r.1	8078737	NADP-dependent malic enzyme, chloroplastic
bdi-r.1	100833074	NADP-dependent malic enzyme, chloroplastic
bdi-r.1	100832025	NADP-dependent malic enzyme, chloroplastic
bdi-r.1	100830323	NADP-dependent malic enzyme
cre-r.1	CHLRE_14g629750v5	uncharacterized protein
cre-r.1	CHLRE_14g629700v5	uncharacterized protein
cre-r.1	CHLRE_14g628650v5	uncharacterized protein

Top 50 coexpressed genes to 106358527 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106358527 (bna-r.1 coexpression data)

CoexMap"106358527"

[Cytoscape]

Annotation

functional annotation

KEGG

bna00620 [list] [network] Pyruvate metabolism (300 genes)

bna00710 [list] [network] Carbon fixation by Calvin cycle (246 genes)

bna01200 [list] [network] Carbon metabolism (888 genes)

GO BP

GO:0006108 [list] [network] malate metabolic process	(51 genes)	IEA
GO:0006090 [list] [network] pyruvate metabolic process	(240 genes)	IEA

GO CC

GO:0009507 [list] [network] chloroplast

(1821 genes)

IEA

GO MF

GO:0004473 [list] [network] malate dehydrogenase (decarboxylating) (NADP+) activity	(10 genes)	IEA
GO:0004471 [list] [network] malate dehydrogenase (decarboxylating) (NAD+) activity	(16 genes)	IEA
GO:0051287 [list] [network] NAD binding	(240 genes)	IEA

Protein

XP_013653797.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, chlo 2

(predict for XP_013653797.1)

Subcellular
localization
TargetP

other 9

(predict for XP_013653797.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106358527	bna-r.1 for 106433358	bna-r.1 for 106429922	bna-r.1 for 106383609	bra-r.6 for 103850789	bra-r.6 for 103855920	ath-u.5 for NADP-ME1	ath-u.5 for NADP-ME2	ghi-r.1 for 107906971	ghi-r.1 for 107897353	ghi-r.1 for 107897092	cit-r.1 for 102626397	cit-r.1 for 102577988	cit-r.1 for 102622357	gma-u.5 for 100818219	gma-u.5 for 100804607	gma-u.5 for 100785718	vvi-u.5 for 100249166	vvi-u.5 for NADP-ME	vvi-u.5 for VVME2	ppo-u.5 for 7461559	ppo-u.5 for 7476690	mtr-u.5 for 25490143	mtr-u.5 for 11434761	mtr-u.5 for 11419897	sly-u.5 for ME1	sly-u.5 for ME2	sly-u.5 for 101249193	sot-r.1 for 102589524	sot-r.1 for 102578500	sot-r.1 for 102580952	nta-r.1 for 107820287	nta-r.1 for 107765028	nta-r.1 for 107772805	osa-u.5 for 4338007	osa-u.5 for 4324717	zma-u.5 for 542233	zma-u.5 for 542331	zma-u.5 for 542209	tae-r.2 for 123180732	tae-r.2 for 123115296	tae-r.2 for 123079048	hvu-r.1 for 123442914	hvu-r.1 for 123444313	hvu-r.1 for 123444382	sbi-r.1 for 8084718	sbi-r.1 for 110433907	sbi-r.1 for 8078737	bdi-r.1 for 100833074	bdi-r.1 for 100832025	bdi-r.1 for 100830323	cre-r.1 for CHLRE_14g629750v5	cre-r.1 for CHLRE_14g629700v5	cre-r.1 for CHLRE_14g628650v5

Ortholog

Ortholog ID: 741

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NADP-ME

VVME2

ME2

Function^*

NADP-dependent malic enzyme 4, chloroplastic-like

NADP-dependent malic enzyme 1

NADP-dependent malic enzyme 3

NADP-dependent malic enzyme 2

NADP-dependent malic enzyme 1

NADP-malic enzyme 1

NADP-malic enzyme 2

NADP-malic enzyme 4

NADP-dependent malic enzyme

malate dehydrogenase (NADP+)

malic enzyme

NADP-dependent malic enzyme-like

NADP-dependent malic enzyme

cytosolic NADP-malic enzyme

NADP-dependent malic enzyme, chloroplastic

NADP-dependent malic enzyme

NADP-dependent malic enzyme-like

NADP-dependent malic enzyme, chloroplastic

NADP-dependent malic enzyme

NADP-dependent malic enzyme-like

NADP-dependent malic enzyme, chloroplastic

NADP-dependent malic enzyme, chloroplastic-like

NADP-dependent malic enzyme

NADP-dependent malic enzyme, chloroplastic-like

NADP malic enzyme 3

NADP malic enzyme 4

uncharacterized LOC100286036

NADP-dependent malic enzyme, chloroplastic

NADP-dependent malic enzyme

NADP-dependent malic enzyme-like

NADP-dependent malic enzyme, chloroplastic-like

NADP-dependent malic enzyme

NADP-dependent malic enzyme, chloroplastic

NADP-dependent malic enzyme

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna01200	Carbon metabolism	12
bna01230	Biosynthesis of amino acids	10
bna00710	Carbon fixation by Calvin cycle	8
bna00220	Arginine biosynthesis	6
bna00250	Alanine, aspartate and glutamate metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00620	Pyruvate metabolism	2
bna00710	Carbon fixation by Calvin cycle	2
bna01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00620	Pyruvate metabolism	6
bna00710	Carbon fixation by Calvin cycle	6
bna01200	Carbon metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00460	Cyanoamino acid metabolism	2
bra00480	Glutathione metabolism	2
bra00620	Pyruvate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	3
bra00620	Pyruvate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2
bra01200	Carbon metabolism	2
bra00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00999	Biosynthesis of various plant secondary metabolites	2
ath00053	Ascorbate and aldarate metabolism	2
ath00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00620	Pyruvate metabolism	10
ath01200	Carbon metabolism	10
ath00010	Glycolysis / Gluconeogenesis	7
ath00020	Citrate cycle (TCA cycle)	5
ath00785	Lipoic acid metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00620	Pyruvate metabolism	4
ghi00710	Carbon fixation by Calvin cycle	4
ghi01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	5
ghi04626	Plant-pathogen interaction	5
ghi00620	Pyruvate metabolism	2
ghi00710	Carbon fixation by Calvin cycle	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi00220	Arginine biosynthesis	2
ghi00230	Purine metabolism	2
ghi00350	Tyrosine metabolism	2
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	3
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00620	Pyruvate metabolism	3
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00941	Flavonoid biosynthesis	3
gma00620	Pyruvate metabolism	3
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
gma00940	Phenylpropanoid biosynthesis	3
gma00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00620	Pyruvate metabolism	3
gma00941	Flavonoid biosynthesis	2
gma00710	Carbon fixation by Calvin cycle	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00941	Flavonoid biosynthesis	3
gma00620	Pyruvate metabolism	2
gma00710	Carbon fixation by Calvin cycle	2
gma01200	Carbon metabolism	2
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00010	Glycolysis / Gluconeogenesis	2
vvi00620	Pyruvate metabolism	2
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi01250	Biosynthesis of nucleotide sugars	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00620	Pyruvate metabolism	4
ppo00280	Valine, leucine and isoleucine degradation	3
ppo01200	Carbon metabolism	3
ppo03272	Virion - Hepatitis viruses	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	3
ppo00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	3
mtr00071	Fatty acid degradation	2
mtr01212	Fatty acid metabolism	2
mtr04146	Peroxisome	2
mtr00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00940	Phenylpropanoid biosynthesis	3
mtr00620	Pyruvate metabolism	2
mtr00710	Carbon fixation by Calvin cycle	2
mtr01200	Carbon metabolism	2
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	3
mtr00020	Citrate cycle (TCA cycle)	2
mtr01210	2-Oxocarboxylic acid metabolism	2
mtr01230	Biosynthesis of amino acids	2
mtr00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	3
sly00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00520	Amino sugar and nucleotide sugar metabolism	4
sot00270	Cysteine and methionine metabolism	4
sot00670	One carbon pool by folate	3
sot01250	Biosynthesis of nucleotide sugars	3
sot01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	8
sot04145	Phagosome	4
sot04148	Efferocytosis	3
sot03060	Protein export	2
sot00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot02010	ABC transporters	4
sot01200	Carbon metabolism	3
sot00620	Pyruvate metabolism	2
sot00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00330	Arginine and proline metabolism	4
nta00410	beta-Alanine metabolism	2
nta00620	Pyruvate metabolism	2
nta00710	Carbon fixation by Calvin cycle	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	4
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
nta04075	Plant hormone signal transduction	2
nta04626	Plant-pathogen interaction	2
nta00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00620	Pyruvate metabolism	3
nta00710	Carbon fixation by Calvin cycle	3
nta01200	Carbon metabolism	3
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	5
osa00010	Glycolysis / Gluconeogenesis	4
osa00620	Pyruvate metabolism	4
osa01230	Biosynthesis of amino acids	4
osa00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	7
osa01230	Biosynthesis of amino acids	5
osa00480	Glutathione metabolism	3
osa00030	Pentose phosphate pathway	3
osa04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	7
zma00710	Carbon fixation by Calvin cycle	6
zma00620	Pyruvate metabolism	5
zma00010	Glycolysis / Gluconeogenesis	4
zma00250	Alanine, aspartate and glutamate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04146	Peroxisome	3
zma01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	3
tae00620	Pyruvate metabolism	3
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	4
tae00620	Pyruvate metabolism	3
tae00710	Carbon fixation by Calvin cycle	3
tae00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	4
tae00620	Pyruvate metabolism	3
tae00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00280	Valine, leucine and isoleucine degradation	2
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	4
hvu01240	Biosynthesis of cofactors	2
hvu00220	Arginine biosynthesis	2
hvu01210	2-Oxocarboxylic acid metabolism	2
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	3
sbi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	3
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	6
sbi00030	Pentose phosphate pathway	3
sbi00010	Glycolysis / Gluconeogenesis	3
sbi00710	Carbon fixation by Calvin cycle	3
sbi01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00740	Riboflavin metabolism	2
bdi00790	Folate biosynthesis	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	2
bdi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00620	Pyruvate metabolism	3
cre00710	Carbon fixation by Calvin cycle	3
cre01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00620	Pyruvate metabolism	3
cre00710	Carbon fixation by Calvin cycle	3
cre01200	Carbon metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

106433358

106357581

106348556

103850789

103855920

103828269

816509

831039

844314

107897353

107897092

107932189

102626397

102577988

102622357

100818219

100801564

100782096

100249166

100233140

100233075

7461559

7470734

25490143

11434761

11412374

543522

101255777

101258131

102589524

102578500

102603300

107765028

107778847

107804419

4338007

4324717

4326769

542233

542209

100286036

123115296

123062027

123070746

123444313

123444382

123427242

110433907

8075558

8065884

100833074

100832025

100830323

5718362

5718373

5722193

The preparation time of this page was 0.3 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	3	3	3	2	3	3	3	3	2	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106358527 (bna-r.1 coexpression data)

Top 50 enrichment test to 106358527 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**