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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106360991   DNA-directed RNA polymerase II subunit 2-like 
 bna-r.1   111213393   DNA-directed RNA polymerase II subunit 2 
 bna-r.1   106432135   DNA-directed RNA polymerase II subunit 2 
 bna-r.1   106401389   DNA-directed RNA polymerase II subunit 2 
 bra-r.6   103834217   DNA-directed RNA polymerase II subunit 2 
 bra-r.6   103859322   DNA-directed RNA polymerase II subunit 2 
 ath-u.5   NRPB2   DNA-directed RNA polymerase family protein 
 ghi-r.1   121230897   DNA-directed RNA polymerase II subunit RPB2 
 ghi-r.1   107960207   DNA-directed RNA polymerase II subunit RPB2 
 cit-r.1   102617803   DNA-directed RNA polymerase II subunit RPB2 
 gma-u.5   100810288   DNA-directed RNA polymerase II subunit RPB2 
 gma-u.5   100790162   DNA-directed RNA polymerase II subunit RPB2 
 vvi-u.5   100252267   DNA-directed RNA polymerase II subunit RPB2-like 
 ppo-u.5   7477407   DNA-directed RNA polymerase II subunit RPB2 
 mtr-u.5   11428063   DNA-directed RNA polymerase II subunit RPB2 
 sly-u.5   RPB2-2   RNA polymerase II second largest subunit 
 sly-u.5   rpb2   RNA polymerase II subunit 2 
 sot-r.1   102592899   DNA-directed RNA polymerase II subunit RPB2 
 nta-r.1   107818481   DNA-directed RNA polymerase II subunit RPB2 
 osa-u.5   4333571   DNA-directed RNA polymerase II subunit RPB2 
 zma-u.5   103626041   DNA-directed RNA polymerase II subunit RPB2 
 zma-u.5   100277195   uncharacterized LOC100277195 
 tae-r.2   123122719   DNA-directed RNA polymerase II subunit RPB2 
 tae-r.2   123113196   DNA-directed RNA polymerase II subunit RPB2 
 hvu-r.1   123452107   DNA-directed RNA polymerase II subunit RPB2 
 sbi-r.1   8062207   DNA-directed RNA polymerase II subunit RPB2 
 bdi-r.1   100838357   DNA-directed RNA polymerase II subunit RPB2 
 cre-r.1   CHLRE_02g075150v5   uncharacterized protein 

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Top 50 coexpressed genes to 106360991 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106360991 (bna-r.1 coexpression data)

CoexMap"106360991"


bnaLOC106360991 | Entrez gene ID : 106360991    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 2 1 2 1 1 1 2 1 1 1 2 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (76 genes)  IEA  
GO MF
GO:0032549 [list] [network] ribonucleoside binding  (19 genes)  IEA  
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048607380.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 4,  vacu 1  (predict for XP_048607380.1)
Subcellular
localization
TargetP
other 7  (predict for XP_048607380.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106360991
bna-r.1
for
111213393
bna-r.1
for
106432135
bna-r.1
for
106401389
bra-r.6
for
103834217
bra-r.6
for
103859322
ath-u.5
for
NRPB2
ghi-r.1
for
121230897
ghi-r.1
for
107960207
cit-r.1
for
102617803
gma-u.5
for
100810288
gma-u.5
for
100790162
vvi-u.5
for
100252267
ppo-u.5
for
7477407
mtr-u.5
for
11428063
sly-u.5
for
RPB2-2
sly-u.5
for
rpb2
sot-r.1
for
102592899
nta-r.1
for
107818481
osa-u.5
for
4333571
zma-u.5
for
103626041
zma-u.5
for
100277195
tae-r.2
for
123122719
tae-r.2
for
123113196
hvu-r.1
for
123452107
sbi-r.1
for
8062207
bdi-r.1
for
100838357
cre-r.1
for
CHLRE_02g075150v5


Ortholog ID: 5805
Species bna bna bna bra bra bra ath ghi ghi cit gma gma vvi ppo mtr sly sly sot nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC111213393 LOC106401389 LOC106347907 LOC103834217 LOC103859322 LOC103834177 NRPB2 LOC121230897 LOC107960207 LOC102617803 LOC100810288 LOC100790162 LOC100252267 LOC7477407 LOC11428063 RPB2-2 rpb2 LOC102592899 LOC107771619 LOC4333571 LOC103626041 LOC100277195 LOC123122719 LOC123113196 LOC123452107 LOC8062207 LOC100838357 CHLRE_02g075150v5
Function* DNA-directed RNA polymerase II subunit 2 DNA-directed RNA polymerase II subunit 2 DNA-directed RNA polymerase II subunit 2 DNA-directed RNA polymerase II subunit 2 DNA-directed RNA polymerase II subunit 2 DNA-directed RNA polymerase II subunit 2-like DNA-directed RNA polymerase family protein DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2-like DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 RNA polymerase II second largest subunit RNA polymerase II subunit 2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2-like DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 uncharacterized LOC100277195 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 8
bna03020 RNA polymerase 6
bna03013 Nucleocytoplasmic transport 3
bna00020 Citrate cycle (TCA cycle) 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 8
bna03020 RNA polymerase 6
bna03013 Nucleocytoplasmic transport 3
bna00020 Citrate cycle (TCA cycle) 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 8
bna03020 RNA polymerase 6
bna03013 Nucleocytoplasmic transport 3
bna00020 Citrate cycle (TCA cycle) 2
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra04120 Ubiquitin mediated proteolysis 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 2
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath03420 Nucleotide excision repair 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03420 Nucleotide excision repair 3
ghi00460 Cyanoamino acid metabolism 3
ghi00500 Starch and sucrose metabolism 3
ghi00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03420 Nucleotide excision repair 3
ghi03020 RNA polymerase 2
ghi03040 Spliceosome 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03420 Nucleotide excision repair 4
gma04120 Ubiquitin mediated proteolysis 3
gma03020 RNA polymerase 2
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma03420 Nucleotide excision repair 4
gma03040 Spliceosome 3
gma03020 RNA polymerase 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo03420 Nucleotide excision repair 2
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 4
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 5
sot04144 Endocytosis 5
sot04141 Protein processing in endoplasmic reticulum 3
sot05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta03082 ATP-dependent chromatin remodeling 2
nta04075 Plant hormone signal transduction 2
nta00310 Lysine degradation 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03420 Nucleotide excision repair 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 9
bdi03020 RNA polymerase 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 111213393 106401389 106347907 103834217 103859322 103834177 828259 121230897 107960207 102617803 100810288 100790162 100252267 7477407 11428063 100736502 544278 102592899 107771619 4333571 103626041 100277195 123122719 123113196 123452107 8062207 100838357 5727192
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