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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106363680   CHD3-type chromatin-remodeling factor PICKLE 
 bna-r.1   106389773   CHD3-type chromatin-remodeling factor PICKLE 
 bra-r.6   103842207   CHD3-type chromatin-remodeling factor PICKLE 
 ath-u.5   PKL   chromatin remodeling factor CHD3 (PICKLE) 
 ghi-r.1   107888393   CHD3-type chromatin-remodeling factor PICKLE 
 ghi-r.1   107953745   CHD3-type chromatin-remodeling factor PICKLE 
 ghi-r.1   107893464   CHD3-type chromatin-remodeling factor PICKLE 
 cit-r.1   102621881   CHD3-type chromatin-remodeling factor PICKLE 
 gma-u.5   100804203   CHD3-type chromatin-remodeling factor PICKLE 
 gma-u.5   100790230   CHD3-type chromatin-remodeling factor PICKLE 
 vvi-u.5   100261114   CHD3-type chromatin-remodeling factor PICKLE 
 ppo-u.5   7458410   CHD3-type chromatin-remodeling factor PICKLE 
 ppo-u.5   7468676   CHD3-type chromatin-remodeling factor PICKLE 
 mtr-u.5   112420341   CHD3-type chromatin-remodeling factor PICKLE-like 
 mtr-u.5   11436035   CHD3-type chromatin-remodeling factor PICKLE 
 sly-u.5   101268002   CHD3-type chromatin-remodeling factor PICKLE 
 sly-u.5   101263831   CHD3-type chromatin-remodeling factor PICKLE-like 
 sot-r.1   102578233   CHD3-type chromatin-remodeling factor PICKLE 
 sot-r.1   102597816   CHD3-type chromatin-remodeling factor PICKLE-like 
 nta-r.1   107828321   CHD3-type chromatin-remodeling factor PICKLE-like 
 nta-r.1   107808298   CHD3-type chromatin-remodeling factor PICKLE 
 nta-r.1   107807123   CHD3-type chromatin-remodeling factor PICKLE 
 osa-u.5   9268973   CHD3-type chromatin-remodeling factor PICKLE 
 zma-u.5   103637982   CHD3-type chromatin-remodeling factor PICKLE 
 tae-r.2   123149755   CHD3-type chromatin-remodeling factor PICKLE 
 tae-r.2   123159597   CHD3-type chromatin-remodeling factor PICKLE 
 tae-r.2   123167550   CHD3-type chromatin-remodeling factor PICKLE 
 hvu-r.1   123410678   CHD3-type chromatin-remodeling factor PICKLE 
 sbi-r.1   8065411   CHD3-type chromatin-remodeling factor PICKLE 
 bdi-r.1   100827866   CHD3-type chromatin-remodeling factor PICKLE 
 cre-r.1   CHLRE_08g377200v5   uncharacterized protein 

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Top 50 coexpressed genes to 106363680 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106363680 (bna-r.1 coexpression data)

CoexMap"106363680"


bnaLOC106363680 | Entrez gene ID : 106363680    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 1 2 1 2 2 2 2 3 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03082 [list] [network] ATP-dependent chromatin remodeling (198 genes)
GO BP
GO:0000122 [list] [network] negative regulation of transcription by RNA polymerase II  (81 genes)  IEA  
GO:0006338 [list] [network] chromatin remodeling  (373 genes)  IEA  
GO CC
GO:0000785 [list] [network] chromatin  (564 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (108 genes)  IEA  
GO:0042393 [list] [network] histone binding  (165 genes)  IEA  
GO:0003682 [list] [network] chromatin binding  (399 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (1360 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_022547047.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1  (predict for XP_022547047.2)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for XP_022547047.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106363680
bna-r.1
for
106389773
bra-r.6
for
103842207
ath-u.5
for
PKL
ghi-r.1
for
107888393
ghi-r.1
for
107953745
ghi-r.1
for
107893464
cit-r.1
for
102621881
gma-u.5
for
100804203
gma-u.5
for
100790230
vvi-u.5
for
100261114
ppo-u.5
for
7458410
ppo-u.5
for
7468676
mtr-u.5
for
112420341
mtr-u.5
for
11436035
sly-u.5
for
101268002
sly-u.5
for
101263831
sot-r.1
for
102578233
sot-r.1
for
102597816
nta-r.1
for
107828321
nta-r.1
for
107808298
nta-r.1
for
107807123
osa-u.5
for
9268973
zma-u.5
for
103637982
tae-r.2
for
123149755
tae-r.2
for
123159597
tae-r.2
for
123167550
hvu-r.1
for
123410678
sbi-r.1
for
8065411
bdi-r.1
for
100827866
cre-r.1
for
CHLRE_08g377200v5


Ortholog ID: 5951
Species bna bna bra ath ghi ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106363680 LOC106389773 LOC103842207 PKL LOC107888393 LOC107953745 LOC107893464 LOC102621881 LOC100804203 LOC100790230 LOC100261114 LOC7458410 LOC7468676 LOC112420341 LOC11436035 LOC101268002 LOC101263831 LOC102578233 LOC102597816 LOC107828321 LOC107808298 LOC107798074 LOC9268973 LOC103637982 LOC123149755 LOC123159597 LOC123167550 LOC123410678 LOC8065411 LOC100827866 CHLRE_08g377200v5
Function* CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE chromatin remodeling factor CHD3 (PICKLE) CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE-like CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE-like CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE-like CHD3-type chromatin-remodeling factor PICKLE-like CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE CHD3-type chromatin-remodeling factor PICKLE uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 2
gma03022 Basal transcription factors 2
gma03040 Spliceosome 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 5
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr03020 RNA polymerase 2
mtr03010 Ribosome 2
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 3
sly04120 Ubiquitin mediated proteolysis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03082 ATP-dependent chromatin remodeling 2
sly04120 Ubiquitin mediated proteolysis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 5
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 5
nta03008 Ribosome biogenesis in eukaryotes 3
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 3
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106363680 106389773 103842207 817055 107888393 107953745 107893464 102621881 100804203 100790230 100261114 7458410 7468676 112420341 11436035 101268002 101263831 102578233 102597816 107828321 107808298 107798074 9268973 103637982 123149755 123159597 123167550 123410678 8065411 100827866 5719923
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