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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106367225   COP9 signalosome complex subunit 3 
 ath-u.5   COP13   Proteasome component (PCI) domain protein 
 gma-u.5   100800241   COP9 signalosome complex subunit 3 
 gma-u.5   100783340   COP9 signalosome complex subunit 3 
 vvi-u.5   100266172   COP9 signalosome complex subunit 3 
 ppo-u.5   7496634   COP9 signalosome complex subunit 3 
 ppo-u.5   7467703   COP9 signalosome complex subunit 3 
 mtr-u.5   11408831   COP9 signalosome complex subunit 3 
 sly-u.5   CSN3   COP9 signalosome complex subunit 3 
 osa-u.5   4344535   COP9 signalosome complex subunit 3 
 zma-u.5   100283125   uncharacterized LOC100283125 
 zma-u.5   103630847   COP9 signalosome complex subunit 3 

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Top 50 coexpressed genes to 106367225 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106367225 (bna-r.1 coexpression data)

CoexMap"106367225"


bnaLOC106367225 | Entrez gene ID : 106367225    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 1 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (910 genes)  IEA  
GO CC
GO:0008180 [list] [network] COP9 signalosome  (36 genes)  IEA  
GO MF
Protein XP_013662407.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 4,  chlo 1,  pero 1  (predict for XP_013662407.1)
Subcellular
localization
TargetP
other 7  (predict for XP_013662407.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106367225

.
ath-u.5
for
COP13

.
gma-u.5
for
100800241

.
gma-u.5
for
100783340

.
vvi-u.5
for
100266172

.
ppo-u.5
for
7496634

.
ppo-u.5
for
7467703

.
mtr-u.5
for
11408831

.
sly-u.5
for
CSN3

.
osa-u.5
for
4344535

.
zma-u.5
for
100283125

.
zma-u.5
for
103630847

.


Ortholog ID: 5574
Species ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol COP13 LOC100783340 LOC100800241 CSN3 LOC4344535 LOC100283125 LOC103630847 LOC103846499 LOC103850919 LOC100266172 LOC7467703 LOC7496634 LOC11408831 LOC123155469 LOC123165045 LOC123407094 LOC107957012 LOC107899702 LOC106381320 LOC106424679 CHLRE_16g671100v5 LOC8066119 LOC102598757 LOC102618670 LOC100841145 LOC107770159 LOC107815752
Function* Proteasome component (PCI) domain protein COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 uncharacterized LOC100283125 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3-like uncharacterized protein COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 3
gma04141 Protein processing in endoplasmic reticulum 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 4
zma04141 Protein processing in endoplasmic reticulum 4
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 8
zma00510 N-Glycan biosynthesis 4
zma00513 Various types of N-glycan biosynthesis 4
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 5
mtr00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi00061 Fatty acid biosynthesis 2
ghi01040 Biosynthesis of unsaturated fatty acids 2
ghi01212 Fatty acid metabolism 2
ghi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi00010 Glycolysis / Gluconeogenesis 3
ghi00562 Inositol phosphate metabolism 3
ghi00220 Arginine biosynthesis 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00730 Thiamine metabolism 2
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 9
sbi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot03050 Proteasome 2
sot00020 Citrate cycle (TCA cycle) 2
sot01200 Carbon metabolism 2
sot04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
cit03083 Polycomb repressive complex 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00300 Lysine biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831275 100783340 100800241 101247481 4344535 100283125 103630847 103846499 103850919 100266172 7467703 7496634 11408831 123155469 123165045 123407094 107957012 107899702 106381320 106424679 5717698 8066119 102598757 102618670 100841145 107770159 107815752
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