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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106371206   3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic-like 
 bna-r.1   106438248   3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic-like 
 bna-r.1   106429645   3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic-like 
 bna-r.1   106391933   3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic 
 bra-r.6   103866199   3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic 
 bra-r.6   103858170   3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic 
 ath-u.5   AT2G45300   RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta 
 ath-u.5   AT1G48860   RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta 
 ghi-r.1   107945613   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 ghi-r.1   107952896   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 ghi-r.1   107954572   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 cit-r.1   102622428   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 gma-u.5   100811089   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 gma-u.5   100789268   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 vvi-u.5   100232912   5-enolpyruvylshikimate-3-phosphate synthase 
 ppo-u.5   18105206   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 ppo-u.5   7453965   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 mtr-u.5   11419944   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 sly-u.5   543977   5-enolpyruvylshikimate-3-phosphate synthase 
 sly-u.5   101265440   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 sot-r.1   102588219   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 sot-r.1   102600915   3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic 
 nta-r.1   107815901   3-phosphoshikimate 1-carboxyvinyltransferase 2-like 
 nta-r.1   107797655   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 nta-r.1   107796782   3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic-like 
 osa-u.5   4340026   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 zma-u.5   542727   enolpyruvylshikimate phosphate synthase 1 
 tae-r.2   100192183   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 tae-r.2   123088173   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 tae-r.2   123165688   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 hvu-r.1   123408136   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 sbi-r.1   8068394   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 bdi-r.1   100837810   3-phosphoshikimate 1-carboxyvinyltransferase 2 
 cre-r.1   CHLRE_03g181300v5   uncharacterized protein 

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Top 50 coexpressed genes to 106371206 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106371206 (bna-r.1 coexpression data)

CoexMap"106371206"


bnaLOC106371206 | Entrez gene ID : 106371206    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 1 2 1 2 1 2 2 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (155 genes)
bna01230 [list] [network] Biosynthesis of amino acids (773 genes)
GO BP
GO:0009423 [list] [network] chorismate biosynthetic process  (15 genes)  IEA  
GO:0009073 [list] [network] aromatic amino acid family biosynthetic process  (148 genes)  IEA  
GO CC
GO MF
GO:0003866 [list] [network] 3-phosphoshikimate 1-carboxyvinyltransferase activity  (4 genes)  IEA  
Protein NP_001412465.1 [sequence] [blastp]
XP_048611259.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_001412465.1)
chlo 9,  mito 1,  vacu 1  (predict for XP_048611259.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001412465.1)
chlo 9  (predict for XP_048611259.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106371206
bna-r.1
for
106438248
bna-r.1
for
106429645
bna-r.1
for
106391933
bra-r.6
for
103866199
bra-r.6
for
103858170
ath-u.5
for
AT2G45300
ath-u.5
for
AT1G48860
ghi-r.1
for
107945613
ghi-r.1
for
107952896
ghi-r.1
for
107954572
cit-r.1
for
102622428
gma-u.5
for
100811089
gma-u.5
for
100789268
vvi-u.5
for
100232912
ppo-u.5
for
18105206
ppo-u.5
for
7453965
mtr-u.5
for
11419944
sly-u.5
for
543977
sly-u.5
for
101265440
sot-r.1
for
102588219
sot-r.1
for
102600915
nta-r.1
for
107815901
nta-r.1
for
107797655
nta-r.1
for
107796782
osa-u.5
for
4340026
zma-u.5
for
542727
tae-r.2
for
100192183
tae-r.2
for
123088173
tae-r.2
for
123165688
hvu-r.1
for
123408136
sbi-r.1
for
8068394
bdi-r.1
for
100837810
cre-r.1
for
CHLRE_03g181300v5


Ortholog ID: 5715
Species bna bna bna bra bra ath ath ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106371206 LOC106438248 LOC106391933 LOC103866199 LOC103858170 AT2G45300 AT1G48860 LOC107945613 LOC107952896 LOC107954572 LOC102622428 LOC100811089 LOC100789268 LOC100232912 LOC18105206 LOC7453965 LOC11419944 LOC543977 LOC101265440 LOC102588219 LOC102600915 LOC107815901 LOC107797655 LOC107796782 LOC4340026 LOC542727 LOC100192183 LOC123088173 LOC123165688 LOC123408136 LOC8068394 LOC100837810 CHLRE_03g181300v5
Function* 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic-like 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic-like 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 5-enolpyruvylshikimate-3-phosphate synthase 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 5-enolpyruvylshikimate-3-phosphate synthase 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic 3-phosphoshikimate 1-carboxyvinyltransferase 2-like 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic-like 3-phosphoshikimate 1-carboxyvinyltransferase 2 enolpyruvylshikimate phosphate synthase 1 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 3-phosphoshikimate 1-carboxyvinyltransferase 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bna01230 Biosynthesis of amino acids 11
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
bna01230 Biosynthesis of amino acids 8
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
bna01230 Biosynthesis of amino acids 8
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 14
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
bra00999 Biosynthesis of various plant secondary metabolites 5
bra01240 Biosynthesis of cofactors 4
bra00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 13
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 12
bra00940 Phenylpropanoid biosynthesis 6
bra00360 Phenylalanine metabolism 3
bra00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00940 Phenylpropanoid biosynthesis 5
ath01200 Carbon metabolism 3
ath00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ath01230 Biosynthesis of amino acids 7
ath00940 Phenylpropanoid biosynthesis 4
ath00360 Phenylalanine metabolism 3
ath00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 11
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
ghi00350 Tyrosine metabolism 5
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 12
ghi01230 Biosynthesis of amino acids 12
ghi00350 Tyrosine metabolism 5
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
ghi01230 Biosynthesis of amino acids 10
ghi00350 Tyrosine metabolism 5
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 11
cit00270 Cysteine and methionine metabolism 5
cit01200 Carbon metabolism 5
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cit00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
gma01230 Biosynthesis of amino acids 7
gma00020 Citrate cycle (TCA cycle) 2
gma00030 Pentose phosphate pathway 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
gma01230 Biosynthesis of amino acids 8
gma00020 Citrate cycle (TCA cycle) 4
gma00030 Pentose phosphate pathway 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 9
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
vvi00350 Tyrosine metabolism 4
vvi00940 Phenylpropanoid biosynthesis 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 4
ppo00670 One carbon pool by folate 3
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ppo00270 Cysteine and methionine metabolism 2
ppo04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 11
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ppo01200 Carbon metabolism 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 12
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
mtr01200 Carbon metabolism 6
mtr00670 One carbon pool by folate 4
mtr00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 10
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01200 Carbon metabolism 3
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 6
sly03010 Ribosome 4
sly00270 Cysteine and methionine metabolism 4
sly01240 Biosynthesis of cofactors 4
sly00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 8
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
sot01200 Carbon metabolism 4
sot00030 Pentose phosphate pathway 3
sot00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 10
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sot00030 Pentose phosphate pathway 3
sot01200 Carbon metabolism 3
sot00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 13
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 13
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 15
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 13
nta00350 Tyrosine metabolism 2
nta00360 Phenylalanine metabolism 2
nta00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
osa01230 Biosynthesis of amino acids 7
osa00999 Biosynthesis of various plant secondary metabolites 2
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 12
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
zma01200 Carbon metabolism 6
zma00270 Cysteine and methionine metabolism 4
zma00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 20
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 17
tae00999 Biosynthesis of various plant secondary metabolites 3
tae01200 Carbon metabolism 3
tae00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 21
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 13
tae01200 Carbon metabolism 7
tae00260 Glycine, serine and threonine metabolism 6
tae00270 Cysteine and methionine metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 18
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 13
tae01200 Carbon metabolism 5
tae00030 Pentose phosphate pathway 3
tae00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 8
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
hvu01200 Carbon metabolism 4
hvu00480 Glutathione metabolism 2
hvu00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 9
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sbi00940 Phenylpropanoid biosynthesis 4
sbi00360 Phenylalanine metabolism 3
sbi00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 10
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
bdi01200 Carbon metabolism 7
bdi00030 Pentose phosphate pathway 4
bdi00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 6
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre00220 Arginine biosynthesis 2
cre00250 Alanine, aspartate and glutamate metabolism 2
cre00630 Glyoxylate and dicarboxylate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106371206 106438248 106391933 103866199 103858170 819138 841308 107945613 107952896 107954572 102622428 100811089 100789268 100232912 18105206 7453965 11419944 543977 101265440 102588219 102600915 107815901 107797655 107796782 4340026 542727 100192183 123088173 123165688 123408136 8068394 100837810 5728449
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