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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106371573   RNA polymerase II C-terminal domain phosphatase-like 4 
 ath-u.5   CPL4   C-terminal domain phosphatase-like 4 
 gma-u.5   100800381   RNA polymerase II C-terminal domain phosphatase-like 4 
 gma-u.5   100785033   RNA polymerase II C-terminal domain phosphatase-like 4 
 vvi-u.5   100854176   RNA polymerase II C-terminal domain phosphatase-like 4 
 vvi-u.5   100852833   RNA polymerase II C-terminal domain phosphatase-like 4 
 mtr-u.5   25494112   RNA polymerase II C-terminal domain phosphatase-like 4 
 sly-u.5   101264737   RNA polymerase II C-terminal domain phosphatase-like 4 
 osa-u.5   4338679   RNA polymerase II C-terminal domain phosphatase-like 4 
 zma-u.5   100286085   CPL3 

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Top 50 coexpressed genes to 106371573 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106371573 (bna-r.1 coexpression data)

CoexMap"106371573"


bnaLOC106371573 | Entrez gene ID : 106371573    
Species bna ath gma vvi mtr sly osa zma bdi hvu bra cit ppo sbi ghi sot nta cre tae
Paralog 1 1 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity  (40 genes)  IEA  
Protein XP_013667110.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_013667110.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_013667110.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106371573
ath-u.5
for
CPL4
gma-u.5
for
100800381
gma-u.5
for
100785033
vvi-u.5
for
100854176
vvi-u.5
for
100852833
mtr-u.5
for
25494112
sly-u.5
for
101264737
osa-u.5
for
4338679
zma-u.5
for
100286085


Ortholog ID: 3878
Species bna bna bra bra ath ghi ghi cit cit gma gma vvi vvi sly sot nta nta osa zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC106425997 LOC106435557 LOC103856720 LOC103845238 CPL4 LOC107938696 LOC107927509 LOC107176483 LOC102609513 LOC100800381 LOC100785033 LOC100852833 LOC100854176 LOC101264737 LOC102591519 LOC107779643 LOC107802706 LOC4338679 LOC100286085 LOC123045386 LOC123054355 LOC123426640 LOC123442381 LOC8076850 LOC8069340 LOC100831091 LOC100837063 CHLRE_02g102950v5
Function* RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 CPL3 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath00480 Glutathione metabolism 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
nta03050 Proteasome 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03015 mRNA surveillance pathway 4
tae04141 Protein processing in endoplasmic reticulum 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106425997 106435557 103856720 103845238 5008312 107938696 107927509 107176483 102609513 100800381 100785033 100852833 100854176 101264737 102591519 107779643 107802706 4338679 100286085 123045386 123054355 123426640 123442381 8076850 8069340 100831091 100837063 5725340
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