ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106371658	ruvB-like protein 1
ath-u.5	RIN1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	102659805	ruvB-like protein 1
gma-u.5	100809596	ruvB-like protein 1
vvi-u.5	100262179	ruvB-like protein 1
ppo-u.5	18098083	ruvB-like protein 1
ppo-u.5	7478571	ruvB-like protein 1
mtr-u.5	11435218	ruvB-like protein 1
sly-u.5	101264735	ruvB-like protein 1
sly-u.5	101256745	ruvB-like protein 1
osa-u.5	4342553	ruvB-like protein 1
osa-u.5	4327368	ruvB-like protein 1
zma-u.5	100272912	uncharacterized LOC100272912
zma-u.5	100191624	RuvB-like protein 1

functional annotation

KEGG

bna03082 [list] [network] ATP-dependent chromatin remodeling (198 genes)

GO BP

GO:0000492 [list] [network] box C/D snoRNP assembly	(24 genes)	IEA
GO:0006338 [list] [network] chromatin remodeling	(373 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(1371 genes)	IEA

GO CC

GO:0097255 [list] [network] R2TP complex	(8 genes)	IEA
GO:0000812 [list] [network] Swr1 complex	(21 genes)	IEA
GO:0035267 [list] [network] NuA4 histone acetyltransferase complex	(34 genes)	IEA
GO:0031011 [list] [network] Ino80 complex	(38 genes)	IEA

GO MF

GO:0003678 [list] [network] DNA helicase activity	(310 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(1360 genes)	IEA
GO:0005524 [list] [network] ATP binding	(5995 genes)	IEA

Protein

XP_013667200.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, chlo 1, nucl 1, E.R. 1

(predict for XP_013667200.2)

Subcellular
localization
TargetP

other 9

(predict for XP_013667200.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106371658	ath-u.5 for RIN1	gma-u.5 for 102659805	gma-u.5 for 100809596	vvi-u.5 for 100262179	ppo-u.5 for 18098083	ppo-u.5 for 7478571	mtr-u.5 for 11435218	sly-u.5 for 101264735	sly-u.5 for 101256745	osa-u.5 for 4342553	osa-u.5 for 4327368	zma-u.5 for 100272912	zma-u.5 for 100191624

Ortholog ID: 4619

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RIN1

Function^*

ruvB-like protein 1

P-loop containing nucleoside triphosphate hydrolases superfamily protein

ruvB-like protein 1

uncharacterized LOC100272912

RuvB-like protein 1

ruvB-like protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi00260	Glycine, serine and threonine metabolism	3
ghi00460	Cyanoamino acid metabolism	3
ghi00630	Glyoxylate and dicarboxylate metabolism	3
ghi00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	6
ghi03082	ATP-dependent chromatin remodeling	4
ghi00260	Glycine, serine and threonine metabolism	3
ghi00460	Cyanoamino acid metabolism	3
ghi00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma01230	Biosynthesis of amino acids	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03010	Ribosome	2
gma03018	RNA degradation	2
gma03013	Nucleocytoplasmic transport	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3
ppo03010	Ribosome	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr00970	Aminoacyl-tRNA biosynthesis	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	3
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot00230	Purine metabolism	2
sot03082	ATP-dependent chromatin remodeling	2
sot03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00908	Zeatin biosynthesis	3
nta03082	ATP-dependent chromatin remodeling	2
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03082	ATP-dependent chromatin remodeling	3
osa03030	DNA replication	2
osa03410	Base excision repair	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03082	ATP-dependent chromatin remodeling	2
zma03008	Ribosome biogenesis in eukaryotes	2
zma03013	Nucleocytoplasmic transport	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03082	ATP-dependent chromatin remodeling	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae04141	Protein processing in endoplasmic reticulum	3
tae00340	Histidine metabolism	3
tae01230	Biosynthesis of amino acids	3
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03082	ATP-dependent chromatin remodeling	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

106384702

106371658

103851434

832293

107889188

107902779

102608634

100809596

102659805

100262179

7478571

18098083

11435218

101256745

101264735

102579037

102584723

107795284

107824339

4342553

4327368

100272912

100191624

123095830

123087141

123449672

8057503

8085442

100835511

5722339

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106371658 (bna-r.1 coexpression data)

Top 50 enrichment test to 106371658 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	2	1	2	1	2	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106371658 (bna-r.1 coexpression data)

Top 50 enrichment test to 106371658 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**