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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CHR38   chromatin remodeling 38 
 ath-u.5   CHR42   chromatin remodeling 42 
 gma-u.5   100811703   SNF2 domain-containing protein CLASSY 1 
 gma-u.5   100785036   SNF2 domain-containing protein CLASSY 2 
 vvi-u.5   100250037   SNF2 domain-containing protein CLASSY 1 
 ppo-u.5   7462098   SNF2 domain-containing protein CLASSY 2 
 mtr-u.5   11435042   SNF2 domain-containing protein CLASSY 1 
 sly-u.5   101262122   SNF2 domain-containing protein CLASSY 1-like 
 osa-u.5   4344376   SNF2 domain-containing protein CLASSY 1 
 zma-u.5   103633601   SNF2 domain-containing protein CLASSY 1 

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Top 50 coexpressed genes to CHR38 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHR38 (ath-u.5 coexpression data)

CoexMap"106371754"


bnaLOC106371754 | Entrez gene ID : 106371754    
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03440 [list] [network] Homologous recombination (136 genes)
GO BP
GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation  (52 genes)  IEA  
GO CC
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (108 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
Protein XP_048599056.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  mito 2,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_048599056.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_048599056.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
CHR38

.
ath-u.5
for
CHR42

.
gma-u.5
for
100811703

.
gma-u.5
for
100785036

.
vvi-u.5
for
100250037

.
ppo-u.5
for
7462098

.
mtr-u.5
for
11435042

.
sly-u.5
for
101262122

.
osa-u.5
for
4344376

.
zma-u.5
for
103633601

.


Ortholog ID: 6279
Species ath ath gma sly osa zma bra vvi ppo mtr ghi ghi bna sbi sot cit cit bdi nta nta
Symbol CHR42 CHR38 LOC100785036 LOC101262122 LOC4344376 LOC103633601 LOC103834007 LOC100250037 LOC7462098 LOC11435042 LOC107962126 LOC107900547 LOC106436900 LOC8084981 LOC102579983 LOC102610506 LOC102611707 LOC100839149 LOC107807410 LOC107789754
Function* chromatin remodeling 42 chromatin remodeling 38 SNF2 domain-containing protein CLASSY 2 SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 2 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 5
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra03020 RNA polymerase 2
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00051 Fructose and mannose metabolism 6
ghi03013 Nucleocytoplasmic transport 4
ghi04075 Plant hormone signal transduction 4
ghi00562 Inositol phosphate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00051 Fructose and mannose metabolism 6
ghi03013 Nucleocytoplasmic transport 4
ghi04075 Plant hormone signal transduction 4
ghi00562 Inositol phosphate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832164 823287 100785036 101262122 4344376 103633601 103834007 100250037 7462098 11435042 107962126 107900547 106436900 8084981 102579983 102610506 102611707 100839149 107807410 107789754
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