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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106372272   RNA polymerase sigma factor sigD, chloroplastic 
 ath-u.5   SIG4   sigma factor 4 
 vvi-u.5   100244848   RNA polymerase sigma factor sigD, chloroplastic 
 ppo-u.5   18102037   RNA polymerase sigma factor sigD, chloroplastic 
 mtr-u.5   120579652   RNA polymerase sigma factor sigD, chloroplastic 
 mtr-u.5   11409298   RNA polymerase sigma factor sigD, chloroplastic 
 sly-u.5   101266372   RNA polymerase sigma factor sigD, chloroplastic 

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Top 50 coexpressed genes to 106372272 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106372272 (bna-r.1 coexpression data)

CoexMap"106372272"


bnaLOC106372272 | Entrez gene ID : 106372272    
Species bna ath vvi ppo mtr sly hvu zma cit bra ghi osa sbi bdi nta gma tae cre sot
Paralog 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (224 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (5322 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3791 genes)  IEA  
Protein XP_013667902.2 [sequence] [blastp]
XP_048598298.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1,  plas 1,  pero 1,  nucl_plas 1  (predict for XP_013667902.2)
chlo 8,  nucl 1,  plas 1,  pero 1,  nucl_plas 1  (predict for XP_048598298.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_013667902.2)
chlo 8  (predict for XP_048598298.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106372272
ath-u.5
for
SIG4
vvi-u.5
for
100244848
ppo-u.5
for
18102037
mtr-u.5
for
120579652
mtr-u.5
for
11409298
sly-u.5
for
101266372


Ortholog ID: 13192
Species bna bna bra bra ath cit vvi ppo mtr mtr sly sot nta nta
Symbol LOC125574912 LOC106417562 LOC103850892 LOC103846548 SIG4 LOC102630560 LOC100244848 LOC18102037 LOC120579652 LOC11409298 LOC101266372 LOC102579944 LOC107830369 LOC107792030
Function* RNA polymerase sigma factor sigD, chloroplastic-like RNA polymerase sigma factor sigD, chloroplastic-like RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic sigma factor 4 RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125574912 106417562 103850892 103846548 831218 102630560 100244848 18102037 120579652 11409298 101266372 102579944 107830369 107792030
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