ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106373017	uncharacterized LOC106373017
bna-r.1	106404131	uncharacterized LOC106404131
bna-r.1	106409094	uncharacterized LOC106409094
bra-r.6	103828562	uncharacterized LOC103828562
ath-u.5	AT1G17450	B-block binding subunit of TFIIIC
ghi-r.1	121230835	uncharacterized LOC121230835
ghi-r.1	107960304	uncharacterized LOC107960304
ghi-r.1	107931588	uncharacterized LOC107931588
cit-r.1	102628666	uncharacterized LOC102628666
gma-u.5	100814813	uncharacterized LOC100814813
gma-u.5	100816444	uncharacterized LOC100816444
vvi-u.5	100267761	uncharacterized LOC100267761
ppo-u.5	112326972	uncharacterized LOC112326972
mtr-u.5	11419389	uncharacterized LOC11419389
sly-u.5	101258404	uncharacterized LOC101258404
sot-r.1	102604011	uncharacterized LOC102604011
sot-r.1	107062014	uncharacterized LOC107062014
nta-r.1	107797468	uncharacterized LOC107797468
nta-r.1	107772692	uncharacterized LOC107772692
nta-r.1	107773984	uncharacterized LOC107773984
osa-u.5	9266913	uncharacterized LOC9266913
osa-u.5	4339658	uncharacterized LOC4339658
osa-u.5	4330065	uncharacterized LOC4330065
zma-u.5	103627728	uncharacterized LOC103627728
zma-u.5	118472110	uncharacterized LOC118472110
zma-u.5	118472111	uncharacterized LOC118472111
tae-r.2	123127695	uncharacterized LOC123127695
tae-r.2	123183308	uncharacterized LOC123183308
tae-r.2	123148919	uncharacterized LOC123148919
hvu-r.1	123452170	uncharacterized LOC123452170
hvu-r.1	123401298	uncharacterized LOC123401298
sbi-r.1	8066182	uncharacterized LOC8066182
sbi-r.1	8075715	uncharacterized LOC8075715
bdi-r.1	100846116	uncharacterized LOC100846116
cre-r.1	CHLRE_12g518107v5	uncharacterized protein

Top 50 coexpressed genes to 106373017 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106373017 (bna-r.1 coexpression data)

CoexMap"106373017"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0042791 [list] [network] 5S class rRNA transcription by RNA polymerase III	(3 genes)	IEA
GO:0006384 [list] [network] transcription initiation at RNA polymerase III promoter	(27 genes)	IEA

GO CC

GO:0000127 [list] [network] transcription factor TFIIIC complex

(25 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(6522 genes)

IEA

Protein

XP_022561488.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1

(predict for XP_022561488.1)

Subcellular
localization
TargetP

chlo 6, other 4

(predict for XP_022561488.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106373017	bna-r.1 for 106404131	bna-r.1 for 106409094	bra-r.6 for 103828562	ath-u.5 for AT1G17450	ghi-r.1 for 121230835	ghi-r.1 for 107960304	ghi-r.1 for 107931588	cit-r.1 for 102628666	gma-u.5 for 100814813	gma-u.5 for 100816444	vvi-u.5 for 100267761	ppo-u.5 for 112326972	mtr-u.5 for 11419389	sly-u.5 for 101258404	sot-r.1 for 102604011	sot-r.1 for 107062014	nta-r.1 for 107797468	nta-r.1 for 107772692	nta-r.1 for 107773984	osa-u.5 for 9266913	osa-u.5 for 4339658	osa-u.5 for 4330065	zma-u.5 for 103627728	zma-u.5 for 118472110	zma-u.5 for 118472111	tae-r.2 for 123127695	tae-r.2 for 123183308	tae-r.2 for 123148919	hvu-r.1 for 123452170	hvu-r.1 for 123401298	sbi-r.1 for 8066182	sbi-r.1 for 8075715	bdi-r.1 for 100846116	cre-r.1 for CHLRE_12g518107v5

Ortholog

Ortholog ID: 3393

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC106373017

uncharacterized LOC106404131

uncharacterized LOC106409094

uncharacterized LOC103828562

B-block binding subunit of TFIIIC

uncharacterized LOC107960304

uncharacterized LOC107931588

uncharacterized LOC107962191

uncharacterized LOC102628666

uncharacterized LOC100814813

uncharacterized LOC100816444

uncharacterized LOC100267761

uncharacterized LOC112326972

uncharacterized LOC11419389

uncharacterized LOC101258404

uncharacterized LOC102604011

uncharacterized LOC107062014

uncharacterized LOC107772692

uncharacterized LOC107773984

uncharacterized LOC107813492

uncharacterized LOC9266913

uncharacterized LOC4339658

uncharacterized LOC4330065

uncharacterized LOC118472110

uncharacterized LOC118472111

uncharacterized LOC100279143

uncharacterized LOC123127695

uncharacterized LOC123148919

uncharacterized LOC123137555

uncharacterized LOC123452170

uncharacterized LOC123401298

uncharacterized LOC8066182

uncharacterized LOC8072962

uncharacterized LOC110434836

uncharacterized LOC100846116

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna03013	Nucleocytoplasmic transport	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna03013	Nucleocytoplasmic transport	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	2
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	4
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3
ath03018	RNA degradation	3
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03013	Nucleocytoplasmic transport	3
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	4
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	4
nta03250	Viral life cycle - HIV-1	4
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00780	Biotin metabolism	3
tae01240	Biosynthesis of cofactors	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

106373017

106404131

106409094

103828562

838317

107960304

107931588

107962191

102628666

100814813

100816444

100267761

112326972

11419389

101258404

102604011

107062014

107772692

107773984

107813492

9266913

4339658

4330065

118472110

118472111

100279143

123127695

123148919

123137555

123452170

123401298

8066182

8072962

110434836

100846116

66055576

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	1	3	1	2	1	1	1	1	2	3	3	3	3	2	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106373017 (bna-r.1 coexpression data)

Top 50 enrichment test to 106373017 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**