Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125579261   ABC transporter F family member 4-like 
 bna-r.1   106401814   transcription factor efuD 
 bra-r.6   103857238   transcription initiation factor IIE subunit alpha 
 bra-r.6   103844523   transcription initiation factor IIE subunit alpha 
 ath-u.5   AT4G20340   Transcription factor TFIIE, alpha subunit 
 ath-u.5   AT1G03280   Transcription factor TFIIE, alpha subunit 
 ghi-r.1   107937293   transcription initiation factor IIE subunit alpha 
 ghi-r.1   107897847   transcription initiation factor IIE subunit alpha 
 ghi-r.1   107912656   transcription initiation factor IIE subunit alpha 
 cit-r.1   102613584   uncharacterized LOC102613584 
 gma-u.5   100810405   transcription initiation factor IIE subunit alpha 
 gma-u.5   100799341   general transcription factor IIE subunit 1 
 gma-u.5   100793678   general transcription factor IIE subunit 1 
 vvi-u.5   100263299   uncharacterized LOC100263299 
 ppo-u.5   18105526   uncharacterized LOC18105526 
 ppo-u.5   7462650   transcription initiation factor IIE subunit alpha 
 mtr-u.5   11408174   general transcription factor IIE subunit 1 
 mtr-u.5   120580122   transcription initiation factor IIE subunit alpha 
 sly-u.5   101258739   uncharacterized LOC101258739 
 sot-r.1   102579587   transcription initiation factor IIE subunit alpha 
 nta-r.1   107814206   uncharacterized LOC107814206 
 nta-r.1   107824528   uncharacterized LOC107824528 
 osa-u.5   9270379   uncharacterized LOC9270379 
 osa-u.5   4345330   uncharacterized LOC4345330 
 zma-u.5   100273603   Transcription factor TFIIE alpha subunit 
 zma-u.5   100273074   uncharacterized LOC100273074 
 tae-r.2   123072736   general transcription factor IIE subunit 1 
 tae-r.2   123080912   general transcription factor IIE subunit 1 
 hvu-r.1   123445630   general transcription factor IIE subunit 1 
 sbi-r.1   8067870   transcription initiation factor IIE subunit alpha 
 bdi-r.1   100834936   transcription initiation factor IIE subunit alpha 
 cre-r.1   CHLRE_11g481550v5   uncharacterized protein 

close


Top 50 coexpressed genes to 125579261 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 125579261 (bna-r.1 coexpression data)

CoexMap"106373901"


bnaLOC106373901 | Entrez gene ID : 106373901    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 2 3 1 3 1 2 2 1 1 2 2 2 2 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
GO BP
GO:0001113 [list] [network] transcription open complex formation at RNA polymerase II promoter  (6 genes)  IEA  
GO CC
GO:0005673 [list] [network] transcription factor TFIIE complex  (10 genes)  IEA  
GO MF
Protein XP_048601470.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 2,  mito 2,  chlo 1,  cysk_nucl 1,  mito_plas 1,  cyto_plas 1  (predict for XP_048601470.1)
Subcellular
localization
TargetP
other 8  (predict for XP_048601470.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125579261
bna-r.1
for
106401814
bra-r.6
for
103857238
bra-r.6
for
103844523
ath-u.5
for
AT4G20340
ath-u.5
for
AT1G03280
ghi-r.1
for
107937293
ghi-r.1
for
107897847
ghi-r.1
for
107912656
cit-r.1
for
102613584
gma-u.5
for
100810405
gma-u.5
for
100799341
gma-u.5
for
100793678
vvi-u.5
for
100263299
ppo-u.5
for
18105526
ppo-u.5
for
7462650
mtr-u.5
for
11408174
mtr-u.5
for
120580122
sly-u.5
for
101258739
sot-r.1
for
102579587
nta-r.1
for
107814206
nta-r.1
for
107824528
osa-u.5
for
9270379
osa-u.5
for
4345330
zma-u.5
for
100273603
zma-u.5
for
100273074
tae-r.2
for
123072736
tae-r.2
for
123080912
hvu-r.1
for
123445630
sbi-r.1
for
8067870
bdi-r.1
for
100834936
cre-r.1
for
CHLRE_11g481550v5


Ortholog ID: 3825
Species bna bna bra bra ath ath ghi ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sot nta nta zma zma tae hvu sbi bdi cre
Symbol LOC106401814 LOC106423057 LOC103857238 LOC103844523 AT4G20340 AT1G03280 LOC107937293 LOC107912656 LOC107953905 LOC102613584 LOC100810405 LOC100799341 LOC100793678 LOC100263299 LOC18105526 LOC7462650 LOC11408174 LOC120580122 LOC101258739 LOC102579587 LOC107814206 LOC107824528 LOC100273603 LOC100273074 LOC123063592 LOC123445630 LOC8067870 LOC100834936 CHLRE_11g481550v5
Function* transcription factor efuD transcription factor efuD-like transcription initiation factor IIE subunit alpha transcription initiation factor IIE subunit alpha Transcription factor TFIIE, alpha subunit Transcription factor TFIIE, alpha subunit transcription initiation factor IIE subunit alpha transcription initiation factor IIE subunit alpha transcription initiation factor IIE subunit alpha uncharacterized LOC102613584 transcription initiation factor IIE subunit alpha general transcription factor IIE subunit 1 general transcription factor IIE subunit 1 uncharacterized LOC100263299 uncharacterized LOC18105526 transcription initiation factor IIE subunit alpha general transcription factor IIE subunit 1 transcription initiation factor IIE subunit alpha uncharacterized LOC101258739 transcription initiation factor IIE subunit alpha uncharacterized LOC107814206 uncharacterized LOC107824528 Transcription factor TFIIE alpha subunit uncharacterized LOC100273074 general transcription factor IIE subunit 1 general transcription factor IIE subunit 1 transcription initiation factor IIE subunit alpha transcription initiation factor IIE subunit alpha uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00061 Fatty acid biosynthesis 2
ghi00071 Fatty acid degradation 2
ghi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi03022 Basal transcription factors 2
ghi00061 Fatty acid biosynthesis 2
ghi00071 Fatty acid degradation 2
ghi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 4
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03008 Ribosome biogenesis in eukaryotes 2
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 6
tae03250 Viral life cycle - HIV-1 3
tae04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106401814 106423057 103857238 103844523 827782 838581 107937293 107912656 107953905 102613584 100810405 100799341 100793678 100263299 18105526 7462650 11408174 120580122 101258739 102579587 107814206 107824528 100273603 100273074 123063592 123445630 8067870 100834936 5722945
The preparation time of this page was 2.0 [sec].